Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D05
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    31   0.59 
05_01_0149 + 989698-991797                                             31   0.78 
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340           30   1.8  
03_02_0583 + 9635002-9637299                                           29   3.2  
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795...    28   7.3  
08_02_0416 + 16902153-16902430,16903089-16903143,16903174-169032...    27   9.7  
06_03_0830 + 25159758-25162460                                         27   9.7  

>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +1

Query: 190 FTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDIS 339
           FT    ++N  G  D+ ++Q+ D+    +G+ P K C+VTC N+ +T+DI+
Sbjct: 124 FTLGYARLNITGC-DFDIYQVLDQ----SGNVPAKLCNVTCPNRGITEDIA 169


>05_01_0149 + 989698-991797
          Length = 699

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 248 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 349
           RS TNTG  P   + R+ T +V  + L T+ W+L
Sbjct: 401 RSFTNTGRMPELFVMRLGTIMVTGFILATIFWRL 434


>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
          Length = 369

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -2

Query: 318 LITSHVAILSRSG---PGAAPVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVLDKADPVTH 148
           ++   +A+L   G    G A + V+   E  V+R+ + HF     KP +++ D A PV+ 
Sbjct: 81  MVVVDLAVLEGHGLEEEGDAELLVLRSGEWTVTRAPVAHFVGRADKPPSWITDMAIPVSE 140

Query: 147 Q 145
           +
Sbjct: 141 R 141


>03_02_0583 + 9635002-9637299
          Length = 765

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 349
           R+ TNT   P   L R+AT +V ++ L T+ W+L
Sbjct: 466 RAFTNTRRTPELFLIRLATVVVTAFILATVFWRL 499


>05_03_0065 -
           7953414-7953845,7953963-7954081,7954158-7955990,
           7957103-7957559
          Length = 946

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 202 IGKVNKNGSRDYG--LFQINDKYWCSTGSTPGKDCHVTCNQLLTDDISVAATCAKKIYKR 375
           +  V  +G R  G  +F++ D+Y    G       HV   Q++TD+ SV  T A  +  +
Sbjct: 447 LDSVECSGDRKDGKYIFELVDRYIEEIGEQ-----HVV--QVVTDNASVNTTAASLLTAK 499

Query: 376 HKFDAWYGWKNHC 414
                W G+  HC
Sbjct: 500 RPSIFWNGYAAHC 512


>08_02_0416 +
           16902153-16902430,16903089-16903143,16903174-16903232,
           16903565-16903655
          Length = 160

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 418 VDSDFSIRTKRQTCGVCKSSLRT 350
           V +  ++ T+ QTCG  K SLRT
Sbjct: 82  VATPHTVETQHQTCGAVKQSLRT 104


>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 169 VENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTCNQLLTDDISVAA 348
           + ++SG F+ K  +  K G  D    Q  ++  C T ST     +      L+  I+VAA
Sbjct: 482 ITDDSGTFSRKHTRSMKLGGIDLNENQCTEEVDCHTKSTLSNSIN------LSTPIAVAA 535

Query: 349 TCAKKIY-KRHKFDAWYGWK 405
           +    ++  R  F+   GWK
Sbjct: 536 SRTSSVFPARLHFEGELGWK 555


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,465
Number of Sequences: 37544
Number of extensions: 312326
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)