Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D03
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0209 + 28420008-28421510                                         30   1.4  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    30   1.4  
10_05_0047 + 8524345-8524414,8524687-8524776,8525004-8525306,852...    28   4.1  
10_04_0013 + 7560286-7560594                                           27   9.6  
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052...    27   9.6  
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489...    27   9.6  

>05_07_0209 + 28420008-28421510
          Length = 500

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 324 SRVEIDKFLGDVDYSEATN---PYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSS 494
           S +++ + L D D + A +   P   +    + MNP  FT+  +    NK +L E+FT+S
Sbjct: 279 SVLQLHRLLVDQDAAAAASFPAPIDGVLDWVASMNPRVFTVVEQEADHNKSSLLERFTNS 338

Query: 495 SRQYQSEVETID 530
              Y S  ++++
Sbjct: 339 LFYYASMFDSLE 350


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
 Frame = +3

Query: 243 GKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPY------ISLSKT 404
           G  +NV  SPL + + + L  +GAG  +R ++   LG    +E  + +      + L+  
Sbjct: 32  GAGRNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADA 91

Query: 405 FSEMNPDFFTMANKIYVGNKYTLDEKFTS-SSRQYQSEVETIDF 533
                P     A+ ++V    +L + F   +  +Y++E  ++DF
Sbjct: 92  SGAGGPR-VAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVDF 134


>10_05_0047 +
           8524345-8524414,8524687-8524776,8525004-8525306,
           8525413-8525872,8525962-8526043,8526157-8526351
          Length = 399

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 357 VDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQYQSEVETI 527
           ++  E  N      K   E N D  T  NK+   ++ T +EK  S+ R+ + + E I
Sbjct: 331 MELKEGDNSERKREKALEEYN-DEITRINKVAAASRLTAEEKRRSAERKVREKAERI 386


>10_04_0013 + 7560286-7560594
          Length = 102

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -2

Query: 381 DWWPHYNLHHPKT-CRSPHDYLHRRLIC 301
           DWW  Y +  P     SPHD   R +IC
Sbjct: 64  DWWS-YGMEFPSAVAASPHDAATRDMIC 90


>07_03_1731 -
           29102403-29102720,29103529-29103735,29103937-29105210,
           29105298-29105734,29106370-29106764,29106921-29107051,
           29109034-29109052
          Length = 926

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 93  VNMIKLYLFA-VIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVVSS 269
           + +I+L+  A V+ +C +R F+FF      T  G          +K+    G D N  SS
Sbjct: 50  LGLIQLWGSADVLNICKMRRFFFFGSSTASTGNGGKTPSDDDSRIKKKALDGGDSNGSSS 109


>05_07_0247 +
           28643862-28644310,28645151-28645207,28645644-28648950,
           28649069-28649144,28649356-28649426,28649524-28649589,
           28649677-28649766,28649874-28650050,28650513-28650548
          Length = 1442

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 315 GEGSRVEIDKFLGDVDYSEATNPYISLSK 401
           GE  + + D  +G+ D  E TNP   LSK
Sbjct: 540 GEDQKQKTDAAVGEEDKCEVTNPVTKLSK 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,610
Number of Sequences: 37544
Number of extensions: 271067
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)