Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D03
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)              29   1.8  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      29   2.4  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       29   2.4  
SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   27   7.4  
SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_29121| Best HMM Match : Toxin_12 (HMM E-Value=8.7)                  27   9.8  

>SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)
          Length = 361

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 333 EIDKFLGDVDYSEATNPYISLSKTFS 410
           ++D F GD+  +EA+NP+I+  K  S
Sbjct: 216 DMDSFTGDIPETEASNPFIAPQKVVS 241


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 360 DYSEATNPYISLSKTFSEMNPDFFTMA-NKIYVGNKY-TLDEKFTSSSRQY 506
           +YS  +  Y++LSK +S ++ ++ T++ N   +   Y TL + + + S+ Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +3

Query: 360 DYSEATNPYISLSKTFSEMNPDFFTMA-NKIYVGNKY-TLDEKFTSSSRQY 506
           +YS  +  Y++LSK +S ++ ++ T++ N   +   Y TL + + + S+ Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +3

Query: 360 DYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTSSSRQY 506
           +YS  +  Y++LSK +S ++ ++ T++      N  TL + + + S+ Y
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLSK-----NYSTLSKNYLTLSKNY 155


>SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 63  VFWLSTTRGRVNMIKLYLFAVIAVCNVRAF 152
           + WL    G+ + + +Y + V+A CN+  F
Sbjct: 264 IMWLWLDFGKADQVFVYFWEVVAFCNIMTF 293


>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1181

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 357 VDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKF 485
           +  S AT P+I +  T    NP+FF ++    +  + T DE +
Sbjct: 276 IKQSNATTPFIVIQNTLEVKNPNFFEVSLSA-LNQQVTWDEHY 317


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 117  FAVIAVCNVRAFYFFDHEYNRTALGDAIDKTSMKLLKEAYTS 242
            + +  V  ++  + F+H Y+R  +  AI K S  L+KE  TS
Sbjct: 1218 YGISNVLPLKKAFTFNHTYSRHGIFKAILKGSGNLIKEEVTS 1259


>SB_12515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +3

Query: 177 RTALGDAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYK--SGAGEGSRVEIDKFL 350
           R    D +D   ++  K  +     ++      G++ + +L    S +    R+E+ K L
Sbjct: 529 RMRFSDTVDIVDVEEAKRLHREALKQSATDPKTGLIDISILTTGLSASDRKRRLELAKSL 588

Query: 351 GDVDYSEATNPYISLSKTFSEM 416
             +  S+   P +   KTFSEM
Sbjct: 589 KALLTSKGKVPTVDYQKTFSEM 610


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 406 KVLLRLMY-GLVASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGE 266
           K+  R +Y  +V  L   S ++L+I  R PSP+PD  R  S  +P+ +
Sbjct: 271 KLKTRFLYLKVVIKLEGGSDEDLAILDRSPSPSPDRRRQRSQSSPHSD 318


>SB_29121| Best HMM Match : Toxin_12 (HMM E-Value=8.7)
          Length = 497

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 41  LSASVHYCILVVDYARTSQHDQVIFIRGYRGLQRASILFL 160
           +  S +  ++ V Y RTSQ+  ++F+   R  Q  S++F+
Sbjct: 401 MRTSQNQSLVCVYYMRTSQNQSLVFVYYLRTSQNQSLVFV 440


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,679
Number of Sequences: 59808
Number of extensions: 321915
Number of successful extensions: 827
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)