Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D03
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ...    31   0.49 
At2g29300.1 68415.m03559 tropinone reductase, putative / tropine...    29   2.0  
At3g25140.1 68416.m03139 glycosyl transferase family 8 protein c...    29   2.6  
At4g36160.1 68417.m05146 no apical meristem (NAM) family protein...    28   3.5  
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    28   3.5  
At4g04010.1 68417.m00571 Ulp1 protease family protein contains P...    28   4.6  
At1g23110.1 68414.m02889 hypothetical protein                          27   6.1  
At4g13330.1 68417.m02083 expressed protein                             27   8.0  
At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to...    27   8.0  
At2g29320.1 68415.m03561 tropinone reductase, putative / tropine...    27   8.0  
At2g29260.1 68415.m03555 tropinone reductase, putative / tropine...    27   8.0  
At1g70900.1 68414.m08181 expressed protein                             27   8.0  
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit...    27   8.0  

>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
           protein low similarity to nucleolar phosphoprotein
           (Nopp52), Tetrahymena thermophila, EMBL:TT51555;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 597

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 339 DKFLGDVDYSEATNPYISLSKTFSEMNPDFFTMANKIYVGN 461
           D++L    Y + T P I   KT S   P+     N++Y+GN
Sbjct: 228 DRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGN 268


>At2g29300.1 68415.m03559 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 263

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 8   SSEFL*LVSQNLSASVHYCILVVDYARTSQHDQVIFIRGYRGL 136
           + +F   +S NL A+ H+C L     +TS +  ++F+    G+
Sbjct: 108 ADDFTFHISTNLEAAYHFCQLSHPLLKTSGYGSIVFLSSVSGV 150


>At3g25140.1 68416.m03139 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 559

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = +3

Query: 255 NVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFFT 434
           +VV+  + +  + +++K    +G+ VE+       DY+   + Y+ + K     N   F 
Sbjct: 281 HVVTDKMNLGAMQVMFKLKEYKGAHVEVKAV---EDYTFLNSSYVPVLKQLESANLQKFY 337

Query: 435 MANKIYVGNKYTLDEKF 485
             NK+    K T + KF
Sbjct: 338 FENKLENATKDTTNMKF 354


>At4g36160.1 68417.m05146 no apical meristem (NAM) family protein
           similar to NAC2 (GI:6456751)  [Arabidopsis thaliana];
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 377

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 150 FYFFDHEYNRTALGDAIDKTSMKLLKEAYTSGKDKNVV--SSPLGVMMLMLLYKSGAGEG 323
           +YFF H+  +   G   ++ +M    +A  +G+DK V   S  +G+   ++ YK  A  G
Sbjct: 69  WYFFSHKDKKYPTGTRTNRATMAGFWKA--TGRDKAVYDKSKLIGMRKTLVFYKGRAPNG 126

Query: 324 SRVE 335
            + +
Sbjct: 127 QKTD 130


>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/116 (18%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
 Frame = +3

Query: 192 DAIDKTSMKLLKEAYTSGKDKNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSE 371
           + + + + K+++    +G   NVV SP+ + +L+ L  +G+   ++ EI  FL       
Sbjct: 12  NVVARLAKKVIETDVANGS--NVVFSPMSINVLLSLIAAGSNPVTKEEILSFLMSPSTDH 69

Query: 372 ATNPYISLSKTFSEMNPDFFTMANKIYVGNKYTLDEKFTS-SSRQYQSEVETIDFS 536
                  ++   +E +    + A+ +++     L   F       Y++    +DF+
Sbjct: 70  LNAVLAKIADGGTERSDLCLSTAHGVWIDKSSYLKPSFKELLENSYKASCSQVDFA 125


>At4g04010.1 68417.m00571 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At2g06430,
           At2g15140, At2g04980, At2g14130, At3g44500, At2g15190,
           At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
          Length = 836

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +3

Query: 387 ISLSKTFSEMNPDFFTMANKIYVGNKY--TLDE---KFTSSSRQYQSE 515
           + L KT  E NP+ F   + ++VG+ +   +DE   +F  +   +QSE
Sbjct: 646 LELMKTRKESNPELFKNKSVVFVGSSFLNVIDESDMEFLDNKEGFQSE 693


>At1g23110.1 68414.m02889 hypothetical protein 
          Length = 261

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 252 KNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFF 431
           K   +S +GV +   LY +     SR ++ K+L  VDY+      I LS+     NP F 
Sbjct: 120 KVYANSLIGVGIASSLYHA-----SRGKLRKYLRWVDYTMIATTTICLSRALRNENPKFL 174

Query: 432 TMANKI 449
             A+ +
Sbjct: 175 MAASAL 180


>At4g13330.1 68417.m02083 expressed protein 
          Length = 428

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 204 YQWRHLRLSCCTRGQRNRMLARCR 133
           YQWR LR +  TR    +++A CR
Sbjct: 114 YQWRSLRFNDDTRQSTVKVMAACR 137


>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to gi:
            3172025; identical to cDNA putative aldehyde oxidase
            (AO3) mRNA, partial cds GI:2792303
          Length = 1321

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 288  LMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMN 419
            L L YK GAGE     +      V  S      +S+ + F+E N
Sbjct: 942  LALFYKDGAGEPHEYTLSSMWDKVGVSSKFEERVSVVREFNESN 985


>At2g29320.1 68415.m03561 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 269

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 8   SSEFL*LVSQNLSASVHYCILVVDYARTSQHDQVIFIRGYRGL 136
           + +F   +S NL A+ H+C L     + S +  ++F+    G+
Sbjct: 114 ADDFTFHISTNLEAAYHFCQLSHPLLKASGYGSIVFLSSVAGV 156


>At2g29260.1 68415.m03555 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 322

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 8   SSEFL*LVSQNLSASVHYCILVVDYARTSQHDQVIFIRGYRG 133
           + EF  L+S N  +  H C L     R S+   V+FI    G
Sbjct: 169 AGEFSTLMSTNFESVFHLCQLAYPLLRESKAGSVVFISSVSG 210


>At1g70900.1 68414.m08181 expressed protein
          Length = 244

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 252 KNVVSSPLGVMMLMLLYKSGAGEGSRVEIDKFLGDVDYSEATNPYISLSKTFSEMNPDFF 431
           K   +S +GV +   LY S     SR +  K+L   DY+      I L++   E NP F 
Sbjct: 103 KVYANSLIGVGIASSLYHS-----SRGKFRKYLRWADYTMIATATICLTRALREENPKFL 157

Query: 432 TMANKI 449
             A+ +
Sbjct: 158 MAASAL 163


>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
           family protein low similarity to extensin [Volvox
           carteri] GI:21992
          Length = 312

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 373 ASL*STSPKNLSISTRLPSPAPDL*RSISIITPNGEDTTF 254
           +SL  +SP  LS+S   P P P     +S ++P+   +T+
Sbjct: 100 SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSSSSSTY 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,212,672
Number of Sequences: 28952
Number of extensions: 225237
Number of successful extensions: 603
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)