Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D02
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  

>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = +3

Query: 189 NTYRLYINIVIRFNY*YFEYFYSKLLLYFINVKF*YSCKF*IIFKMYYYKFKEYVYIF 362
           + Y  Y      + Y Y+ Y+Y     Y+ +  + Y   +   +  YYY +  Y Y +
Sbjct: 101 HAYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYY 158



 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +3

Query: 195 YRLYINIVIRFNY*YFEYFYSKLLLYFINVKF*YSCKF*IIFKMYYYKFKEYVYIF 362
           Y  Y      + Y Y+ Y+Y     Y+ +  + Y   +   +  YYY +  Y Y +
Sbjct: 104 YYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYY 159



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = +3

Query: 195 YRLYINIVIRFNY*YFEYFYSKLLLYFINVKF*YSCKF*IIFKMYYYKFKEYVY 356
           Y  Y      + Y Y+ Y+Y     Y+    + Y   +   +  YYY +  Y Y
Sbjct: 111 YYYYYYYYYYYYYYYYYYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,447
Number of Sequences: 59808
Number of extensions: 185039
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)