Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D01
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 122 3e-29
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 84 1e-17
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 29 0.35
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 26 2.4
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 26 3.2
SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase |Schizosac... 25 5.6
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 25 7.4
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 25 7.4
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 25 7.4
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.8
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 24 9.8
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 24 9.8
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 122 bits (294), Expect = 3e-29
Identities = 57/133 (42%), Positives = 87/133 (65%)
Frame = +2
Query: 8 AWNNYKLYAWGKNELKPMSKRAHLSSVFGASDLGLTIVDGLSTLYLMGLNDEFREGRDWV 187
+W +Y+ Y WGK+E P+ KR + +G I+D L T+ +MGL+++ R+WV
Sbjct: 57 SWTDYETYGWGKDEYYPIIKRGRN---YLRKGMGWMIIDSLDTMMIMGLDEQVLRAREWV 113
Query: 188 AEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTVFRDKAVEVADALLPAFQTPTGLP 367
L +N+ D E+SVFETTIR +GGLLS Y L+ D ++ D+AV++AD LL A+ T TGLP
Sbjct: 114 NNSLTWNQDDEEVSVFETTIRILGGLLSSYHLSQDKLYLDRAVDLADRLLAAYNTSTGLP 173
Query: 368 YALINPSTKASKQ 406
+ +N T+ S++
Sbjct: 174 RSNVNLGTRKSRK 186
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 83.8 bits (198), Expect = 1e-17
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 20/146 (13%)
Frame = +2
Query: 5 HAWNNYKLYAWGKNELKPMSKRAHLSSVFGASDLG---------LTIVDGLSTLYLMGLN 157
H +NNY +A+ +EL P+S +++G LT+VD L TL ++G
Sbjct: 45 HGYNNYMQFAFPNDELAPLSCEGLGPDYENPNNIGVNDVRGDYLLTLVDVLDTLVVLGDR 104
Query: 158 DEFREGRDWVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTVFRDK--------- 310
+ F++ D V H++F E DT++ VFE TIR +GGLLS + + + +
Sbjct: 105 EGFQDAVDKVIHHINF-ERDTKVQVFEATIRILGGLLSSHIFASEEKYGFQIPLYKGELL 163
Query: 311 --AVEVADALLPAFQTPTGLPYALIN 382
A E+A+ LLPAF+TPTG+P+A IN
Sbjct: 164 TLATELAERLLPAFRTPTGIPFARIN 189
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 29.1 bits (62), Expect = 0.35
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +2
Query: 158 DEFREGRDWVAEHLHFN--EVDTEL-SVFETTIRFI 256
DEFRE W+ ++L N ++D EL F+T +R++
Sbjct: 287 DEFREQVAWIIDYLLKNRRDIDAELYEPFQTAVRYV 322
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 26.2 bits (55), Expect = 2.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 272 CYSLTGDTVFRDKAVEVADAL 334
C L GD VFR A+E+ D L
Sbjct: 19 CVYLAGDLVFRPNAIELFDEL 39
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 3.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 363 YRMLSLILQLRQANNTIGRDPTVYYPNWVLFIW 461
YR+L+ + A +I + P + +P +LF+W
Sbjct: 404 YRLLNAPVSAISAYISIVQKPNIAFPEIILFLW 436
>SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 159
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 110 LTIVDGLSTLYLMGLNDEFREGRDW 184
LT+++ LY GLN G DW
Sbjct: 122 LTVLNEEQALYRAGLNGGHNHGNDW 146
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 161 EFREGRDWVAEHLHFNEVDTELSVFETTIRFI 256
E E D + EHL N +L + +TT+ +
Sbjct: 353 EKNENDDQILEHLARNSQKAQLPILQTTVHLL 384
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 7.4
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 190 GDPVSSLSELIIESHQVESAESVYDGESEVASAEHARQVSAF 65
G SS SE SH+V S S S +AS EH + +
Sbjct: 109 GAGASSHSEETTPSHEVTSNVSSGSSASSLASNEHRSLIETY 150
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 7.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 322 HFHCFIPEHCVTGQRITRQES 260
HFHC I H V+G I + +
Sbjct: 280 HFHCNIHVHSVSGNAIRKSRN 300
>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 250
Score = 24.2 bits (50), Expect = 9.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Frame = +2
Query: 158 DEFREGRD-WV---AEHLHFNEVDT--ELSVFETTIRFIGGLLSCYSLTGDTVF 301
D RE D W+ ++ +E+D E + I F GG ++CY L T+F
Sbjct: 171 DAIREAEDDWIDNGGQNSSADELDMSYETLLAGVLIGFFGGAIACYFLWERTMF 224
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 290 DTVF-RDKAVEVADALLPAFQTPTGLPYALINPSTKASKQYHWAGPNSILS 439
D++F + A + ++P+ TP G P +P+ H A P++ S
Sbjct: 233 DSLFGKRSAAQAMATVVPSVSTPGGTPPRFASPALTVESMVH-AAPSTTTS 282
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 24.2 bits (50), Expect = 9.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 156 MMSSERDETGSPNICISTKSIRSYRYSRQPSGSSVDSCRVIR-*PVTQCSGIKQ 314
++S + + ++ + + RS+ YSR SG S+DS V V+ SGI Q
Sbjct: 3553 VLSGYSESSFDSSVFVPSSVSRSFSYSRFSSG-SLDSSSVFNSTTVSTASGISQ 3605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,949
Number of Sequences: 5004
Number of extensions: 34902
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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