Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D01
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)             192   2e-49
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)             113   9e-26
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   2e-09
SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24)          30   1.1  
SB_43462| Best HMM Match : VWA (HMM E-Value=5.8e-22)                   29   1.9  
SB_59643| Best HMM Match : DUF1610 (HMM E-Value=3.3)                   29   1.9  
SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7)                   27   5.7  
SB_46719| Best HMM Match : zf-nanos (HMM E-Value=3.9)                  27   10.0 
SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   10.0 
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          27   10.0 

>SB_39877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score =  192 bits (467), Expect = 2e-49
 Identities = 86/154 (55%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
 Frame = +2

Query: 2   QHAWNNYKLYAWGKNELKPMSKRAHLSSVFGASDLGLTIVDGLSTLYLMGLNDEFREGRD 181
           +HAWN Y  YAWG NEL+P+S   H +S+FG   +G T+VD LSTL LMG+N+EF  GR 
Sbjct: 177 KHAWNGYVTYAWGSNELRPISHTGHSASIFGRGSMGATVVDALSTLKLMGMNEEFERGRK 236

Query: 182 WVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTVFRDKAVEVADALLPAFQTPTG 361
           WVA++L+FN+  +++SVFE TIRF+GGLLS Y+L+G+ VF+ KA E+ D LLPAF TPTG
Sbjct: 237 WVAQNLNFNQA-SDISVFEMTIRFLGGLLSAYALSGEEVFKVKAKELGDKLLPAFNTPTG 295

Query: 362 LPYALINPSTKASKQYHWA-GPNSILSELGTLHL 460
           +P+A++N ++ +   + WA G  SIL+E GTLHL
Sbjct: 296 IPWAMVNLASGSGHNWGWASGGCSILAEFGTLHL 329


>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
          Length = 758

 Score =  113 bits (271), Expect = 9e-26
 Identities = 55/110 (50%), Positives = 76/110 (69%)
 Frame = +2

Query: 2   QHAWNNYKLYAWGKNELKPMSKRAHLSSVFGASDLGLTIVDGLSTLYLMGLNDEFREGRD 181
           +HAW  YK +AWG +ELKP+SK    S  F   ++GLTI+D L T+ L+ L DEFRE RD
Sbjct: 359 RHAWKGYKQFAWGHDELKPISKS--FSEWF---NIGLTIIDSLDTMLLLNLKDEFREARD 413

Query: 182 WVAEHLHFNEVDTELSVFETTIRFIGGLLSCYSLTGDTVFRDKAVEVADA 331
           WVA  L F++ + ++++FE TIR +GGLLS Y L+ D +F +KAV   +A
Sbjct: 414 WVANSLSFDK-NVDVNLFEVTIRVLGGLLSAYHLSNDDIFLNKAVSTINA 462



 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 19/55 (34%), Positives = 34/55 (61%)
 Frame = +2

Query: 296 VFRDKAVEVADALLPAFQTPTGLPYALINPSTKASKQYHWAGPNSILSELGTLHL 460
           + + + VE+ D LLP F + +G+P++ +N  T+      W GP+S +SE+ T+ L
Sbjct: 521 MLKTRGVELGDRLLPCFNSQSGIPFSDVNLMTRQVHPPRW-GPDSSVSEVSTIQL 574


>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 19/162 (11%)
 Frame = +2

Query: 26  LYAWGKNELKPMSKRAHLSSVFGASDLGLTIVDGLSTLYLMGLNDEFREGRDWVAEHLHF 205
           ++  G+   +      +++ V G  D  LT+V+ L TL +MG + EF+     V +++HF
Sbjct: 133 IHCTGRGPDRKNPTNININDVLG--DYSLTLVEALGTLAVMGNSTEFKLAVQHVIDNVHF 190

Query: 206 NEVDTELSVFETTIRFIGGLLSCYSLTGDTV--FRDK------------AVEVADALLPA 343
           +   T + VFE  IR +G LLS + +  D +  F D             A ++A+ L+ A
Sbjct: 191 DRKST-VQVFEANIRVLGSLLSAHMIIKDPLQPFGDMSPDDYDDELLTLAHDLANRLVDA 249

Query: 344 F-QTPTGLPYALIN-PSTKASKQYH---WAGPNSILSELGTL 454
           F ++PTG+PY  +N  S +A +       AG  S+L E G L
Sbjct: 250 FNKSPTGIPYPRVNLTSGEALRDRSDTCLAGAGSLLLEFGVL 291


>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 35   WGKNELKPMSKRAHLSSVFGASDLGLTIVDGLSTLYLMG 151
            W K++ KP+S R H+ + F     GL  V    TL LMG
Sbjct: 915  WSKHKDKPLSGRNHILASFCPQVYGLYAVKLAVTLILMG 953


>SB_23159| Best HMM Match : Glyco_hydro_47 (HMM E-Value=1e-24)
          Length = 257

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 338 PAFQTPTGLPYALIN 382
           PAF TPTG+PY  +N
Sbjct: 8   PAFDTPTGMPYGTVN 22


>SB_43462| Best HMM Match : VWA (HMM E-Value=5.8e-22)
          Length = 320

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 307 IPEHCVTGQRITRQESTDEPDGCLEYR*LR 218
           +P H +T QRI R    DEPD    +R LR
Sbjct: 90  VPPHMITAQRIQRFFIIDEPDDPSTHRILR 119


>SB_59643| Best HMM Match : DUF1610 (HMM E-Value=3.3)
          Length = 363

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 368 YALINPSTKASKQYHWAGPNSILSELG 448
           YAL+ P+TK S +Y   G   +L E G
Sbjct: 247 YALVKPATKCSNEYCSTGKKCVLREKG 273


>SB_22182| Best HMM Match : DUF1626 (HMM E-Value=1.7)
          Length = 357

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 98  SDLGLTIVDGL----STLYLMGLNDEFREGRDWVAEHLHFNEVDTELS 229
           +D+ L IV G      T++  G  + F++G+ W+ +   + E+D  +S
Sbjct: 170 TDIVLHIVKGFCLMSKTIFFSGAREIFKQGQRWLTQAKEYYELDGHVS 217


>SB_46719| Best HMM Match : zf-nanos (HMM E-Value=3.9)
          Length = 166

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 161 EFREGRDWVAEHLHFNEVDTELSVFETTIRFI 256
           EF   R+ + + LH      EL +F+T   FI
Sbjct: 99  EFHTARNNIGQQLHIGVGSEELRIFDTEFNFI 130


>SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 265 ESTDEPDGCLEYR*LRIDFVEMQMFGDPVSSLSELIIESHQVESAESVYDGESEV-ASAE 89
           +S +E D  L    L  D V ++   +P+      +I S  +E  ES+YD E  V AS  
Sbjct: 154 KSHNEIDVFLVLTSLSPDDVIIEEVEEPLGYARVKMITSSAMEDVESIYDSEVSVPASLI 213

Query: 88  HA 83
           HA
Sbjct: 214 HA 215


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +2

Query: 56   PMSKRAHLSSVFGASDLGLTIVDGLSTLYLMGLNDEFREGRDWVAEHLHFNEVDTELSVF 235
            P+    ++ + +    +G TI   L  LY+ G N     G +W+   L  N  D    VF
Sbjct: 1805 PLGSYLYIEASYPRQKVGQTITRSL--LYIPGAN----YGDNWLKNQLQVNAADDFQIVF 1858

Query: 236  ETTI 247
            + T+
Sbjct: 1859 QATV 1862


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,035
Number of Sequences: 59808
Number of extensions: 271577
Number of successful extensions: 659
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)