Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C23
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   2.3  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    24   2.3  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    24   3.1  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    23   7.1  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    23   7.1  

>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 107 IWTWFPSY 84
           IW WFPSY
Sbjct: 274 IWNWFPSY 281


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 40  MYCLSVYICVVFMREYEGN 96
           +Y LS YIC +F+++  GN
Sbjct: 409 IYGLSYYICGLFLKKLMGN 427


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 46  CLSVYICVVFMREYEGNQV 102
           CLS+YI + + RE +G ++
Sbjct: 152 CLSLYISMTYKREEQGKRL 170


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 92 PSYSRINTTQI*TL 51
          P YSRI+TTQ+ T+
Sbjct: 8  PHYSRIHTTQLLTV 21


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 104 RFVIDNDAGGDDAMAIFMSLLYEE 175
           + +ID D G DDA+   +++   E
Sbjct: 2   KIIIDTDPGQDDAITALLAIASPE 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,650
Number of Sequences: 5004
Number of extensions: 10620
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)