Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C23
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0027 - 195321-195932,197206-197415                               29   0.70 
01_03_0207 - 13790801-13792057                                         26   3.7  
01_03_0134 + 12879254-12879596,12879689-12879796,12879905-128800...    26   4.9  

>08_01_0027 - 195321-195932,197206-197415
          Length = 273

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 146 PSXXXXXXXXXXRIWTWFPSYSRINTTQ 63
           PS           IW WFPS S+  TTQ
Sbjct: 23  PSSYRRSDSFKIGIWNWFPSQSQSPTTQ 50


>01_03_0207 - 13790801-13792057
          Length = 418

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 29  MNKTCIVLVFISVLCLCVSMKGTKS 103
           M++TCI L+ +SV  +     GTKS
Sbjct: 177 MHRTCIALILVSVHTMAGEWFGTKS 201


>01_03_0134 +
           12879254-12879596,12879689-12879796,12879905-12880000,
           12880090-12880182,12880861-12880949,12881313-12881588,
           12881656-12881808
          Length = 385

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 157 HKYGHRIVAACIIIYYESGLGSLHTHA 77
           HK    I AA +++++ S L SLH +A
Sbjct: 24  HKQQQLIFAALLLLFFFSSLQSLHCYA 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,592,823
Number of Sequences: 37544
Number of extensions: 65990
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)