Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C23
         (179 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR450288-1|CAG29284.1|  296|Homo sapiens NRG1 protein.                 29   2.7  
L41827-1|AAC41764.1|  296|Homo sapiens sensory and motor neuron-...    28   6.2  
BT007389-1|AAP36053.1|  296|Homo sapiens neuregulin 1 protein.         28   6.2  
BC073871-1|AAH73871.1|  296|Homo sapiens neuregulin 1 protein.         28   6.2  
BC064587-1|AAH64587.1|  296|Homo sapiens neuregulin 1 protein.         28   6.2  
BC007675-1|AAH07675.1|  296|Homo sapiens neuregulin 1 protein.         28   6.2  
AK223435-1|BAD97155.1|  296|Homo sapiens neuregulin 1 isoform SM...    28   6.2  
AF491780-9|AAM71137.1|  222|Homo sapiens neuregulin 1 isoform SM...    28   6.2  

>CR450288-1|CAG29284.1|  296|Homo sapiens NRG1 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  CLRMNKTCIVLVFISVLCLCVSMKGTKSRFV 112
           CL + K CIV +   ++ LC+ + G K  FV
Sbjct: 70  CLNLEKICIVPILACLVSLCLCIAGLKWVFV 100


>L41827-1|AAC41764.1|  296|Homo sapiens sensory and motor
           neuron-derived factor protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 20  CLRMNKTCIVLVFISVLCLCVSMKGTKSRFV 112
           CL   K CIV +   ++ LC+ + G K  FV
Sbjct: 70  CLNSEKICIVPILACLVSLCLCIAGLKWVFV 100


>BT007389-1|AAP36053.1|  296|Homo sapiens neuregulin 1 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 20  CLRMNKTCIVLVFISVLCLCVSMKGTKSRFV 112
           CL   K CIV +   ++ LC+ + G K  FV
Sbjct: 70  CLNSEKICIVPILACLVSLCLCIAGLKWVFV 100


>BC073871-1|AAH73871.1|  296|Homo sapiens neuregulin 1 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 20  CLRMNKTCIVLVFISVLCLCVSMKGTKSRFV 112
           CL   K CIV +   ++ LC+ + G K  FV
Sbjct: 70  CLNSEKICIVPILACLVSLCLCIAGLKWVFV 100


>BC064587-1|AAH64587.1|  296|Homo sapiens neuregulin 1 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 20  CLRMNKTCIVLVFISVLCLCVSMKGTKSRFV 112
           CL   K CIV +   ++ LC+ + G K  FV
Sbjct: 70  CLNSEKICIVPILACLVSLCLCIAGLKWVFV 100


>BC007675-1|AAH07675.1|  296|Homo sapiens neuregulin 1 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 20  CLRMNKTCIVLVFISVLCLCVSMKGTKSRFV 112
           CL   K CIV +   ++ LC+ + G K  FV
Sbjct: 70  CLNSEKICIVPILACLVSLCLCIAGLKWVFV 100


>AK223435-1|BAD97155.1|  296|Homo sapiens neuregulin 1 isoform SMDF
           variant protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 20  CLRMNKTCIVLVFISVLCLCVSMKGTKSRFV 112
           CL   K CIV +   ++ LC+ + G K  FV
Sbjct: 70  CLNSEKICIVPILACLVSLCLCIAGLKWVFV 100


>AF491780-9|AAM71137.1|  222|Homo sapiens neuregulin 1 isoform SMDF
           protein.
          Length = 222

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 20  CLRMNKTCIVLVFISVLCLCVSMKGTKSRFV 112
           CL   K CIV +   ++ LC+ + G K  FV
Sbjct: 70  CLNSEKICIVPILACLVSLCLCIAGLKWVFV 100


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,448,184
Number of Sequences: 237096
Number of extensions: 387909
Number of successful extensions: 561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)