Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C23
         (179 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05620.1 68414.m00583 inosine-uridine preferring nucleoside h...    32   0.047
At2g36310.1 68415.m04457 inosine-uridine preferring nucleoside h...    27   1.3  
At4g36350.1 68417.m05161 calcineurin-like phosphoesterase family...    27   2.3  
At5g55470.1 68418.m06909 sodium proton exchanger / Na+/H+ exchan...    26   3.1  

>At1g05620.1 68414.m00583 inosine-uridine preferring nucleoside
           hydrolase family protein similar to Chain A, Crystal
           Structure Of Nucleoside Hydrolase From Leishmania
           MajorGI:8569431; contains Pfam profile PF01156:
           Inosine-uridine preferring nucleoside hydrolase
          Length = 322

 Score = 32.3 bits (70), Expect = 0.047
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 92  GTKSRFVIDNDAGGDDAMAIFMSL 163
           G + + +ID D G DDAMAIF++L
Sbjct: 4   GDRKKIIIDTDPGIDDAMAIFVAL 27


>At2g36310.1 68415.m04457 inosine-uridine preferring nucleoside
           hydrolase family protein similar to Chain A, Crystal
           Structure Of Nucleoside Hydrolase From Leishmania
           MajorGI:8569431; contains Pfam profile PF01156:
           Inosine-uridine preferring nucleoside hydrolase
          Length = 336

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 92  GTKSRFVIDNDAGGDDAMAIFMS 160
           G   + +ID D G DD+MAI M+
Sbjct: 19  GKHEKLIIDTDPGIDDSMAILMA 41


>At4g36350.1 68417.m05161 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 466

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 23  LRMNKTCIVLVFISVLCLCVSMKGTKSRFV 112
           +RMNK  +V VF+S+  +  S  GT S FV
Sbjct: 1   MRMNKILLVFVFLSIATVINS--GTTSNFV 28


>At5g55470.1 68418.m06909 sodium proton exchanger / Na+/H+
          exchanger 4 (NHX4) identical to Na+/H+ exchanger 4
          [Arabidopsis thaliana] GI:19919844; Member of The
          Monovalent Cation:Proton Antiporter (CPA1) Family,
          PMID:11500563
          Length = 529

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 2  FVPNSMCLRMNKTCIVLVFISVLCLCV 82
          FV N +     +   + VFI++LCLC+
Sbjct: 8  FVTNKLAAEHPQVIPISVFIAILCLCL 34


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,778,153
Number of Sequences: 28952
Number of extensions: 54399
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 12,070,560
effective HSP length: 39
effective length of database: 10,941,432
effective search space used: 218828640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)