Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C22
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    27   1.6  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   2.9  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   2.9  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    26   3.8  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   3.8  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   3.8  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   3.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.0  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   5.0  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   6.6  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   8.7  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   8.7  

>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = +1

Query: 52  NSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTV 231
           NSIF    Q PTT+   T T +  S V   N     G  +T P    S    PT+     
Sbjct: 64  NSIFGKTQQQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTKPVDET 123

Query: 232 N 234
           N
Sbjct: 124 N 124


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 477 HWTANIQE*RTSAIRATYIDIIRVIFI 397
           H +A ++   T+ IR T+IDII+ +++
Sbjct: 104 HKSAVVRHHNTTRIRETFIDIIKALYV 130


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 73  NQAPTTTKKPTMTVSAPSAVPTVNTNGNRGR 165
           + +PT T  P + VS PSA P  + + N  +
Sbjct: 164 SSSPTNTPSPNLPVSQPSASPHYSGDKNSAK 194


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 358 IPPPDR--F**CTAYRWYLQSELLL 290
           +PPP+R  +  C   RWY   ELLL
Sbjct: 203 LPPPNRREYTGCVVTRWYRSPELLL 227


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 67  IPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNP 237
           IPN   T       + SAP+   TV++  ++ +  T   D  +    P  AP ++ P
Sbjct: 145 IPNSEQTVDTLDAASSSAPNFTHTVSSASSQKQGSTSLTDTENQKAHPAAAPQSLTP 201


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
 Frame = -2

Query: 123 WGTNSH-----GWFLSSCWCLIRYFENAVYFFEVYIIGVCL 16
           WG   H      W ++  WCL   F + + +F V   GV L
Sbjct: 349 WGMARHINYFGDWIMAWAWCLPAGFGSPIPYFYVAYFGVLL 389


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 270 GWFLSSSGDGYRIDCSRSLRRYFENTVYIIGV 175
           GW LS      R+   + LR++FE   +I G+
Sbjct: 337 GWMLSDINTTVRLTVVKVLRKFFETDSFIGGL 368


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 97  KPTMTVSAPSAVPT 138
           KPT T SAPSA PT
Sbjct: 292 KPTATTSAPSASPT 305


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 55  SIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNG 153
           S F+ PN+AP+T  +      +P+     NTNG
Sbjct: 295 SNFRSPNRAPSTNNRYRGWNGSPTPAAGNNTNG 327


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 331  ITKTGQEGVCVKDYFCNNNEMT--NKDDTDNVDISGPNGGCSSFLDICCPVS 480
            + K  +E +  + Y  N N  T  N+ +   V + G +GG  SF  IC  +S
Sbjct: 1008 VIKHQEEFLEPRVYPANRNLATAHNRHEKSKVSVQGLSGGEKSFATICMLLS 1059


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 403 LYWSFRCCCKSSLLHI 356
           L+W+ RC C  + LH+
Sbjct: 228 LWWAIRCICSRTKLHL 243


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 70  PNQAPTTTKKPTMTVSAPSAVPTVN-TNGNR 159
           P   P+T ++     +AP   P VN TN NR
Sbjct: 315 PQDQPSTQQQQPQRTAAPPNNPNVNATNNNR 345


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 331 ITKTGQEGVCVKDYFCNNNEMTNKDDTDNVDISGPNGGCSS 453
           ITK     VC+++Y     + T KDD   + +SG N G  S
Sbjct: 567 ITKEEMAKVCMENYDSEFGKKTKKDD---ILVSGFNFGTGS 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.129    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,518
Number of Sequences: 5004
Number of extensions: 46109
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)