Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C22
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.79 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 436 NGGCSSFLDICCPVS 480
           +GGCSS +D+  PV+
Sbjct: 925 DGGCSSLVDVSTPVN 939


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 28  NDIDLEEINSIFKIPNQA 81
           ND+DLE+   I   P+QA
Sbjct: 306 NDLDLEKYEGISSTPSQA 323


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 67  IPNQAPTTTKKPTMTVSAPSA 129
           +P+++PT T  PTM   A +A
Sbjct: 595 VPSKSPTLTHSPTMYGDALNA 615


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 336 SNARRIVGIYSRNYC 292
           +NARR+  + +  YC
Sbjct: 527 TNARRVASVRAETYC 541


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 336 SNARRIVGIYSRNYC 292
           +NARR+  + +  YC
Sbjct: 495 TNARRVASVRAETYC 509


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +1

Query: 307  VNTNDTPCITKTGQEGVCVKDYFCNNNEMTNKDDTDNVDISGPNGGCSSFLDI 465
            V TN          +G C   YF   ++  N+ + + V  +   GG    LD+
Sbjct: 1472 VATNSITLHLNAWSDGGCPMIYFVVEHKKKNQQEWNQVSNNVKPGGNFVVLDL 1524


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 230 SIR*PSPELLRNQP 271
           S R PSP LL +QP
Sbjct: 40  SSRSPSPSLLTSQP 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.129    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,689
Number of Sequences: 438
Number of extensions: 3325
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.3 bits)