Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C22
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g69310.2 68414.m07949 WRKY family transcription factor contai... 30 0.79
At1g69310.1 68414.m07948 WRKY family transcription factor contai... 30 0.79
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t... 30 1.0
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r... 29 1.8
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei... 27 7.3
At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa... 27 7.3
At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identic... 27 7.3
At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family... 27 9.7
At2g21110.1 68415.m02505 disease resistance-responsive family pr... 27 9.7
>At1g69310.2 68414.m07949 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 287
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +1
Query: 175 DPDDINSVFKIPTQAPGTVNPVXXXXXXXXXXXXESAPSAIVPTVNTNDTPCITKTGQEG 354
DP S +P P NP +APS +P T DTP ++ +EG
Sbjct: 218 DPHSFTSHHHLPPPLP---NPYYYQELLHQLHRDNNAPSPRLPRPTTEDTPAVSTPSEEG 274
Query: 355 V 357
+
Sbjct: 275 L 275
>At1g69310.1 68414.m07948 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 287
Score = 30.3 bits (65), Expect = 0.79
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +1
Query: 175 DPDDINSVFKIPTQAPGTVNPVXXXXXXXXXXXXESAPSAIVPTVNTNDTPCITKTGQEG 354
DP S +P P NP +APS +P T DTP ++ +EG
Sbjct: 218 DPHSFTSHHHLPPPLP---NPYYYQELLHQLHRDNNAPSPRLPRPTTEDTPAVSTPSEEG 274
Query: 355 V 357
+
Sbjct: 275 L 275
>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 917
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Frame = +1
Query: 130 VPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVN---PVXXXXXXXXXXXXESAPSAIV 300
V V NG+ G D D DDI VFK + T N P+ +S+P
Sbjct: 7 VKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTNRPSPINNAMRNSAIGSTKSSPPMRS 66
Query: 301 PTVNTN 318
P + N
Sbjct: 67 PLTSPN 72
>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
cerevisiae,PID:g555939
Length = 724
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 277 ESAPSAIVPTVNT-NDTPCITKTGQEGVCVKDYFCNNNEMTNKDDTDNVDISGP 435
ES +V T + ND + T ++ + V+D ++ ++N DDT D+ P
Sbjct: 402 ESTEKLVVVTSDVENDGENVASTTEDEITVRDTITDSGSISNNDDTKVEDLQLP 455
>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 758
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 1 GSAHAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYD 171
G + A + D D EI + K N+ +T+KP + + V T+GN R D
Sbjct: 376 GGSDANSVDTDEDFPEIMPLRKGVNRYVVSTRKPPLERRLANTENRVATDGNSKRSD 432
>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 166
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 403 LYWSFRCCCKSSLLHIPPPD 344
L+ + RCC + L H+P PD
Sbjct: 54 LHAAIRCCLRPVLQHVPKPD 73
>At1g74520.1 68414.m08633 ABA-responsive protein (HVA22a) identical
to AtHVA22a [Arabidopsis thaliana] GI:4884932
Length = 177
Score = 27.1 bits (57), Expect = 7.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 90 SCWCLIRYFENAVYFFEVYI 31
+CW +I YF A Y +E ++
Sbjct: 83 TCWLVIPYFSGAAYVYEHFV 102
>At5g14380.1 68418.m01680 hydroxyproline-rich glycoprotein family
protein identical to gi|4775268|emb|CAB42531
Length = 150
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 70 PNQAPT-TTKKPTMTVSAPSAVP 135
P +APT TTK P+ AP+A P
Sbjct: 38 PTKAPTATTKAPSAPTKAPAAAP 60
>At2g21110.1 68415.m02505 disease resistance-responsive family
protein similar to disease resistance response protein
206-d [Pisum sativum] gi|508844|gb|AAB18669
Length = 186
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 103 TMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNP 237
T+T PSA+ RG D+ P S+F + P TV P
Sbjct: 46 TLTAPNPSAILIAKPTHTRGDNDSSPSPFGSLFAL--DDPLTVGP 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.310 0.129 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,374,872
Number of Sequences: 28952
Number of extensions: 243295
Number of successful extensions: 468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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