Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C20
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    43   4e-05
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.8  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   3.7  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.7  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    26   4.8  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   8.5  
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.5  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
 Frame = +3

Query: 111 NVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITA--KDSSNKDLR 284
           N  RTID+ S   K  + +   N G      +    + S  E++  ++   K+   K   
Sbjct: 26  NAIRTIDLRSTYTKTLTSLIIVNEGDEPQNTYRYFQQTSPGESVLSLSVSIKEEEKKGTN 85

Query: 285 LTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQLVKYIG 464
             +     YD      + L+  V  G +  + +       ++P P  + Q E+Q + Y+ 
Sbjct: 86  PIKVNNNVYD------IPLQPPVKPGESRTLLIQAGLDGGVRPLPAAVDQDEEQYLVYLT 139

Query: 465 NLYVYSPY 488
            LY+ SPY
Sbjct: 140 TLYLDSPY 147


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 226 ESSTAIRKFFIVDFPVFSKVIFDVIFTSC 140
           +++ AIR +F+V  P+F K+ +  +F  C
Sbjct: 482 KAADAIRSYFMVIEPIFKKICYLWLFLYC 510


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 27/81 (33%), Positives = 40/81 (49%)
 Frame = +3

Query: 99  IQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKDSSNKD 278
           I +KNV + +  S   VK  S  + +N GKS I + L +   S  ENL       +S   
Sbjct: 16  ILYKNVCQVLCKSGSSVKSGSPWSIKNDGKSIIHDTLNS-SYSDIENL-------NSRVS 67

Query: 279 LRLTETTVKGYDYVKFWRVEL 341
             L + T K  DY++F+R+ L
Sbjct: 68  PLLFDLTEKS-DYMRFYRLNL 87


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 26/116 (22%), Positives = 56/116 (48%)
 Frame = +3

Query: 24  YFIGFFVLYVTIYCNSASIDTISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKN 203
           YFI  F+LYV ++ ++ SI    +DI+   + R   ++ + V I S +  E      +K 
Sbjct: 205 YFISIFLLYV-LFSSTKSI----ADIRQSYLARQNRLTDRTVFI-SGLPNELCSTENLKA 258

Query: 204 FLIAVEDSAKENLAFITAKDSSNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTT 371
           +   ++  + ++L+    ++ S  D+ L++ +       K+W + L +    G +T
Sbjct: 259 YFDKLDVGSIDSLSI--CRNYSYMDILLSKKSKYVKKLEKYWSIYLSNCKKLGIST 312


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 240 LAFITAKDSSNKDLRLTETTVKGYDYVKFWRV 335
           L  + A +++ +DLR+ + TVK   Y + W V
Sbjct: 335 LWIVLALNNTIRDLRIRKQTVKAQMYTRLWIV 366


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 187 FPVFSKVIFDVIFTSCEE---ISIVRSTFLNCISLDIVSILALL 65
           FP  ++ IF+V+ T+C+    +S VRST +   S+    +LA L
Sbjct: 276 FPFVAENIFNVLPTTCKSLVVLSQVRSTAVGTSSIYYSFLLATL 319


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 414 YPTEITQQEDQLVKYIGNLYVYSPYYV 494
           YP E+    D  +    NL +Y PYY+
Sbjct: 904 YPMELLTLTDGRIGITTNLTLYKPYYL 930


>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 575 VDLREWFYFSKSFDILSVHDYVSF-LRYHXXXXXXX*VTDIFH 450
           VDL E +   KS  IL V+DY S    YH        + D+ H
Sbjct: 196 VDLSESYIELKSSSILFVYDYSSLNPTYHCESNVVLKLIDLAH 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,737
Number of Sequences: 5004
Number of extensions: 42259
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)