Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C20
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   5e-09
SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)                     31   0.54 
SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)                      31   0.71 
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099)                   29   2.9  
SB_14339| Best HMM Match : TFIIB (HMM E-Value=0.0037)                  29   2.9  
SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_13269| Best HMM Match : P-II (HMM E-Value=6.8)                      28   5.0  
SB_53059| Best HMM Match : Endonuclease_7 (HMM E-Value=3.4)            28   5.0  
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         28   6.6  
SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +3

Query: 30  IGFFVLYVTIYCNSASIDT-ISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNF 206
           +GF +L          +D  I+ D+      R ID+SSQLVK+++ IT +N G   + +F
Sbjct: 6   LGFVLLTACYIFTLTPVDADINHDLVLSKASRKIDLSSQLVKVSTSITLDNGGNQPVDSF 65

Query: 207 LIAVEDSAKENLAFITAKDSSNKDLRLTE 293
             AV+ S  +NLA ++A    + D+ + E
Sbjct: 66  HFAVDPSVADNLALLSASSGGSVDVSVEE 94


>SB_11767| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1230

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 179 VLKGYFRCNFHKLRRNIYRSVYIFKLYIARYSVN-TSTVAIYRYVKYEKTY 30
           + +  +R  +  L RNIYR++Y  K+Y A YS N   TV  YR + Y   Y
Sbjct: 99  IYRALYRNIYRALYRNIYRALY-SKIYFALYSKNLLRTVPHYRAL-YRNIY 147


>SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)
          Length = 238

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
 Frame = +3

Query: 192 TIKNFLIAVEDSAKENLAFITAKDSSN-----KDLRLTETTVKGYDYVKFWRVELKDAVN 356
           TI+N  +  +D++KE  A   + DSS+     + L L +  +K    ++   V+L   VN
Sbjct: 50  TIRNAQVWYQDTSKETKAVDPSLDSSSSSEPMQQLYLQQQQIKTAAEMEKNHVKLVHDVN 109

Query: 357 AGSTTAVTVDTVFTKALQPYPTEITQQEDQLVKYIGNLYVYSPYYVIS 500
             ST    ++ V     QP   ++T  +D    + GN  V+ P  V+S
Sbjct: 110 --STALDDLEVVGMHQSQPITVQVTASQD-FTLHNGNGSVHGPTPVVS 154


>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2905

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 108  KNVDRTIDISSQLVKITSKIT-FENTGKSTIKNFLIAVEDSAKENLAFITAKDSSNKDL 281
            K+ D T+ + S  + I  K+   +N+    IK FL+   +S  +NL     + +  +DL
Sbjct: 2182 KSSDDTLSVKSSFIAIKKKLLDAKNSSLPVIKGFLLFTAESMLDNLCDSLTEKTEEQDL 2240


>SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099)
          Length = 775

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
 Frame = -1

Query: 338 FNTPKFHIIVTFHCSLR*TKVFVAA-----IFSCDEC*ILLCRVFY----RDQEILYC 192
           F+ PK  ++VT+H S+     FV A     +++C E  +  CRV Y    R+  + YC
Sbjct: 547 FDYPKT-MLVTYHLSILCRVSFVGACRVSVVYACRESHVAYCRVSYFDACRESHVAYC 603


>SB_14339| Best HMM Match : TFIIB (HMM E-Value=0.0037)
          Length = 580

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 434 LSYLCRIRLQSLCENGINRHGGRRPGVYSILQFN 333
           LS +C+   QSLC+  +N    R  G YS L+ N
Sbjct: 55  LSIICKKTCQSLCQKPVNHFVTRSSGGYSGLKTN 88


>SB_23998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 171 FENTGKSTIKNFLIAVEDSAKENLAFITAKDSSNKDLR 284
           +EN     +KNF++ +    +E  A++ AK+S  +D+R
Sbjct: 636 WENKVIPALKNFVVELSKYIEETRAYLYAKESGAEDIR 673


>SB_13269| Best HMM Match : P-II (HMM E-Value=6.8)
          Length = 205

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 234 ENLAFITAKDSSNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFT 398
           E L  +   D   +D+       KG  Y      EL+D V   STT + +D V+T
Sbjct: 86  EELVSVGLTDVHAEDILDIIEGYKGKGYAVSTTEELEDIVRISSTTGIMLDPVYT 140


>SB_53059| Best HMM Match : Endonuclease_7 (HMM E-Value=3.4)
          Length = 294

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 303 KGYDYVKFWRVELKDAVNAGSTTAVTVDTVFT 398
           KG  Y    + EL+  +  G TT +TVD V+T
Sbjct: 199 KGLGYGISTQEELEHVIEIGCTTGITVDPVYT 230


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +3

Query: 87   ISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKDS 266
            I  D+  + +DR       ++K  S + F +TG+  I   +I V +      A    K+S
Sbjct: 2576 IGDDVSKEELDRVTIFKDNVIKPASDVPFYDTGEEIISK-IIGVPE-VFVTFAVTPNKNS 2633

Query: 267  SNKDLRLTETTV 302
            ++K  +L + T+
Sbjct: 2634 TDKVYKLMKDTI 2645


>SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 30  IGFFVLYVTIYCNSASIDTISSDIQFKNV 116
           +GF  ++ T+YC+SA++  + S + +  +
Sbjct: 313 LGFSWIFHTVYCHSANVSKVFSRLDYSGI 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,240
Number of Sequences: 59808
Number of extensions: 298186
Number of successful extensions: 703
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)