Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C20
(599 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for ... 96 7e-20
CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein. 96 7e-20
BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein. 96 7e-20
AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant pr... 94 3e-19
BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I... 90 5e-18
CR533565-1|CAG38596.1| 632|Homo sapiens RACGAP1 protein. 35 0.19
BC032754-1|AAH32754.1| 632|Homo sapiens RACGAP1 protein protein. 35 0.19
AB040911-1|BAA96002.1| 570|Homo sapiens KIAA1478 protein protein. 35 0.19
AB030251-1|BAA90247.1| 632|Homo sapiens GTPase activating prote... 35 0.19
>Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for
ribophorin I. ).
Length = 607
Score = 96.3 bits (229), Expect = 7e-20
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Frame = +3
Query: 108 KNVDRTIDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDS 266
++V RT+D+SS L K+T+++ + G S +FL+A+E + LA + +D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 267 SNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQ 446
+L + ET +KG +F+ V+L A++ G+ +V V+TV+T L PYPT+ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 447 LVKYIGNLYVYSPYYVISQXXXXXXXXXXXXXXXXXXPFSQIDGTIHYGPY 599
V + GN Y YSPY +Q ++ + + YGP+
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPF 203
>CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein.
Length = 607
Score = 96.3 bits (229), Expect = 7e-20
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Frame = +3
Query: 108 KNVDRTIDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDS 266
++V RT+D+SS L K+T+++ + G S +FL+A+E + LA + +D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 267 SNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQ 446
+L + ET +KG +F+ V+L A++ G+ +V V+TV+T L PYPT+ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 447 LVKYIGNLYVYSPYYVISQXXXXXXXXXXXXXXXXXXPFSQIDGTIHYGPY 599
V + GN Y YSPY +Q ++ + + YGP+
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPF 203
>BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein.
Length = 607
Score = 96.3 bits (229), Expect = 7e-20
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Frame = +3
Query: 108 KNVDRTIDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDS 266
++V RT+D+SS L K+T+++ + G S +FL+A+E + LA + +D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 267 SNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQ 446
+L + ET +KG +F+ V+L A++ G+ +V V+TV+T L PYPT+ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 447 LVKYIGNLYVYSPYYVISQXXXXXXXXXXXXXXXXXXPFSQIDGTIHYGPY 599
V + GN Y YSPY +Q ++ + + YGP+
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPF 203
>AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant
protein.
Length = 607
Score = 94.3 bits (224), Expect = 3e-19
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 7/171 (4%)
Frame = +3
Query: 108 KNVDRTIDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDS 266
++V RT+D+SS L K+T+++ + G S +FL+A+E + LA + +D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 267 SNKDLRLTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQ 446
+L + ET +KG +F+ V+L A++ G+ +V V+TV+T L PYPT+ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 447 LVKYIGNLYVYSPYYVISQXXXXXXXXXXXXXXXXXXPFSQIDGTIHYGPY 599
V + GN Y Y PY +Q ++ + + YGP+
Sbjct: 153 FVVFEGNHYFYPPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPF 203
>BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I
protein.
Length = 568
Score = 90.2 bits (214), Expect = 5e-18
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 7/165 (4%)
Frame = +3
Query: 126 IDISSQLVKITSKITFENTG---KSTIKNFLIAVEDSAKENLAF----ITAKDSSNKDLR 284
+D+SS L K+T+++ + G S +FL+A+E + LA + +D +L
Sbjct: 1 VDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLE 60
Query: 285 LTETTVKGYDYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTEITQQEDQLVKYIG 464
+ ET +KG +F+ V+L A++ G+ +V V+TV+T L PYPT+ITQ E Q V + G
Sbjct: 61 VRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEG 119
Query: 465 NLYVYSPYYVISQXXXXXXXXXXXXXXXXXXPFSQIDGTIHYGPY 599
N Y YSPY +Q ++ + + YGP+
Sbjct: 120 NHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPF 164
>CR533565-1|CAG38596.1| 632|Homo sapiens RACGAP1 protein.
Length = 632
Score = 35.1 bits (77), Expect = 0.19
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 84 TISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKD 263
+I SDI F D ++D S LVK T K+ +ST + F+ K+ + +A D
Sbjct: 151 SILSDISFDKTDESLDWDSSLVK-TFKLKKREKRRSTSRQFVDGPPGPVKKTRSIGSAVD 209
Query: 264 SSNKDLRLTETTV 302
N+ + + +TTV
Sbjct: 210 QGNESI-VAKTTV 221
>BC032754-1|AAH32754.1| 632|Homo sapiens RACGAP1 protein protein.
Length = 632
Score = 35.1 bits (77), Expect = 0.19
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 84 TISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKD 263
+I SDI F D ++D S LVK T K+ +ST + F+ K+ + +A D
Sbjct: 151 SILSDISFDKTDESLDWDSSLVK-TFKLKKREKRRSTSRQFVDGPPGPVKKTRSIGSAVD 209
Query: 264 SSNKDLRLTETTV 302
N+ + + +TTV
Sbjct: 210 QGNESI-VAKTTV 221
>AB040911-1|BAA96002.1| 570|Homo sapiens KIAA1478 protein protein.
Length = 570
Score = 35.1 bits (77), Expect = 0.19
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 84 TISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKD 263
+I SDI F D ++D S LVK T K+ +ST + F+ K+ + +A D
Sbjct: 89 SILSDISFDKTDESLDWDSSLVK-TFKLKKREKRRSTSRQFVDGPPGPVKKTRSIGSAVD 147
Query: 264 SSNKDLRLTETTV 302
N+ + + +TTV
Sbjct: 148 QGNESI-VAKTTV 159
>AB030251-1|BAA90247.1| 632|Homo sapiens GTPase activating protein
protein.
Length = 632
Score = 35.1 bits (77), Expect = 0.19
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 84 TISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKD 263
+I SDI F D ++D S LVK T K+ +ST + F+ K+ + +A D
Sbjct: 151 SILSDISFDKTDESLDWDSSLVK-TFKLKKREKRRSTSRQFVDGPPGPVKKTRSIGSAVD 209
Query: 264 SSNKDLRLTETTV 302
N+ + + +TTV
Sbjct: 210 QGNESI-VAKTTV 221
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,769,596
Number of Sequences: 237096
Number of extensions: 1344547
Number of successful extensions: 2603
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2591
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -