Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C20
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01720.1 68415.m00100 ribophorin I family protein similar to ...    91   4e-19
At1g76400.1 68414.m08878 ribophorin I family protein similar to ...    75   4e-14
At1g30360.1 68414.m03712 early-responsive to dehydration stress ...    28   4.1  
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati...    28   5.4  
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At1g54090.1 68414.m06164 exocyst subunit EXO70 family protein co...    27   9.5  

>At2g01720.1 68415.m00100 ribophorin I family protein similar to
           SP|P04843 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin I) {Homo sapiens}; contains Pfam
           profile PF04597: Ribophorin I
          Length = 464

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 9/199 (4%)
 Frame = +3

Query: 30  IGFFVLYVTIYCNSASIDTISSDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFL 209
           IG F ++V +  + ++  + + D+Q  N +R ID+SS +VK    +  EN GK      L
Sbjct: 5   IGIFSVFVAVLLSISAFSS-AQDLQIVNAERRIDLSSHIVKAFLTLKVENIGKDPAAEML 63

Query: 210 IAVEDSAKENLAFITAKDSSNK---------DLRLTETTVKGYDYVKFWRVELKDAVNAG 362
           +A   +  +NLA + A  ++ K         D++ TE      D   ++RV     +  G
Sbjct: 64  LAFPPTQIKNLAMVQALATTGKKKKKTYLPLDVKPTEQPDAPND-TGYYRVTFISPLGPG 122

Query: 363 STTAVTVDTVFTKALQPYPTEITQQEDQLVKYIGNLYVYSPYYVISQXXXXXXXXXXXXX 542
            T ++ V  + T +L+P+P EITQ E QLV Y  +  + SPY+V  Q             
Sbjct: 123 ETVSLEVLYILTHSLEPFPVEITQSESQLVYYHDSAVILSPYHVKQQTTFIKTPSTRVES 182

Query: 543 XXXXXPFSQIDGTIHYGPY 599
                P ++    I YGPY
Sbjct: 183 FTSIEPANRAGKEIKYGPY 201


>At1g76400.1 68414.m08878 ribophorin I family protein similar to
           ribophorin I [Sus scrofa] GI:9857227; contains Pfam
           profile PF04597: Ribophorin I
          Length = 614

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 9/178 (5%)
 Frame = +3

Query: 93  SDIQFKNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKDSSN 272
           SD+    V+R ID++SQ+ ++T  +   N+G  ++  F +        NLA+++   S  
Sbjct: 25  SDLVLSKVERRIDVTSQIARVTKTLKVVNSGSESVSEFALTFPKFLGNNLAYLSVAPSEG 84

Query: 273 K--------DLRLTETTVKGY-DYVKFWRVELKDAVNAGSTTAVTVDTVFTKALQPYPTE 425
           K        +L + E   KG  D +  + V L   ++ G T  + V   FT  LQP+P +
Sbjct: 85  KGKSKRTLVNLSVREADQKGLPDSISVYSVALPKPLSKGDTLTLEVVAAFTNVLQPFPEK 144

Query: 426 ITQQEDQLVKYIGNLYVYSPYYVISQXXXXXXXXXXXXXXXXXXPFSQIDGTIHYGPY 599
           ITQ E  LV    +    SPY V SQ                          + YGPY
Sbjct: 145 ITQGEIHLVMLQESAQYLSPYAVESQSLSIKLPNARIESYTKFENTKLQGSELKYGPY 202


>At1g30360.1 68414.m03712 early-responsive to dehydration stress
           protein (ERD4) nearly identical to ERD4 protein
           (early-responsive to dehydration stress) [Arabidopsis
           thaliana] GI:15375406; contains Pfam profile PF02714:
           Domain of unknown function DUF221
          Length = 724

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 18  RFYFIGFFVLYVTIYCNSASIDTISSDIQFKNVDRTIDISSQLVKITS 161
           R YFI FFV  VTI      I  +S+    KN+ R I     +V+IT+
Sbjct: 362 RQYFIYFFVA-VTILFYMIPIAFVSAITTLKNLQRIIPFIKPVVEITA 408


>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650207]
           [PMID: 11247608] Contains Pfam domain PF00432:
           Prenyltransferase and squalene oxidase repeat
          Length = 758

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 195 IKNFLIAVEDSAKENLAFITAKDSSNKDLRLTETTVKGYDYVK 323
           I++F   + D+A    A +   D  + D  +  T VKGYDY+K
Sbjct: 412 IQSFGSQLWDTALSLHALLDGIDDHDVDDEIKTTLVKGYDYLK 454


>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature
          Length = 408

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 396 TKALQPYPTEITQQEDQLVKYIGNL 470
           T +  PY   +T  E++L KYIG+L
Sbjct: 377 THSRPPYTPSMTSHEEELEKYIGDL 401


>At1g54090.1 68414.m06164 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 622

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/80 (22%), Positives = 38/80 (47%)
 Frame = +3

Query: 108 KNVDRTIDISSQLVKITSKITFENTGKSTIKNFLIAVEDSAKENLAFITAKDSSNKDLRL 287
           + VDR +    ++ +  S I+  +  K+TI+  +  +ED  +  L  I+   +   D  L
Sbjct: 44  EEVDRYLKAVDEVQRHISSISISDEVKATIQIAMARLEDELRNIL--ISQTSTFEPDSLL 101

Query: 288 TETTVKGYDYVKFWRVELKD 347
            ++++    +    R EL+D
Sbjct: 102 LDSSLSSSSFASSSRTELED 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,840,103
Number of Sequences: 28952
Number of extensions: 199458
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)