Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C19
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 38 0.001
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 31 0.19
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 31 0.19
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.3
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 9.2
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 38.3 bits (85), Expect = 0.001
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Frame = +1
Query: 268 IKCDVADGDQLAAAYEQVLDKYRRLDGVINNAAVLSVDERSFKKMIDINFTATVNSTLKG 447
++ DV+ DQ+ A E+V+ +D +INNA + D+ F+++ ++ V+ L+G
Sbjct: 50 LQADVSKADQIETAIEKVIQTLGPIDVLINNAGL--ADDTPFEQLSHESWDHDVSLVLRG 107
Query: 448 ------LDCMGIDKGGRGGVVVNMSSLLALNPSSHL--PVYAATKTAVLQFSIAM 588
+ K G+GG +VN+ S +N +L P Y+A K + + A+
Sbjct: 108 NYLTQRYVIPHMAKQGKGGSIVNIGS---VNGHIYLGSPAYSAAKAGLENLTKAL 159
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 30.7 bits (66), Expect = 0.19
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Frame = +1
Query: 277 DVADGDQLAAAYEQVLDKYRRLDGVINNA--AVLSVDERSFKKMIDINFTATVNSTLKGL 450
DV + + + E+ + + R+D ++NNA +V S E + ++ I F V L+ +
Sbjct: 22 DVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVI 81
Query: 451 DCM-GIDKGGRGGVVVNMSSLLALNPSSHLPVYAATKTAVLQFSIAMGSDDYYMKTQVRV 627
+ I + G+++N+SS+ +Y TK A+ S A+ + + +V++
Sbjct: 82 KAITPIFRSQHNGMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKI 141
Query: 628 L 630
+
Sbjct: 142 I 142
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 30.7 bits (66), Expect = 0.19
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Frame = +1
Query: 277 DVADGDQLAAAYEQVLDKYRRLDGVINNA--AVLSVDERSFKKMIDINFTATVNSTLKGL 450
DV + + + E+ + + R+D ++NNA +V S E + ++ I F V L+ +
Sbjct: 22 DVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGALEVI 81
Query: 451 DCM-GIDKGGRGGVVVNMSSLLALNPSSHLPVYAATKTAVLQFSIAMGSDDYYMKTQVRV 627
+ I + G+++N+SS+ +Y TK A+ S A+ + + +V++
Sbjct: 82 KAITPIFRSQHNGMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKI 141
Query: 628 L 630
+
Sbjct: 142 I 142
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.0
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Frame = -2
Query: 368 TAALFMTPSSLRYLSKTCSYAAASWSPSATSHFINFALRAPNLFISSAS-KAAPSRTAIS 192
++ L + SSL S + +++S PS++S ++ N+ SS S A S +AI
Sbjct: 674 SSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIP 733
Query: 191 ---RKATCLAFSESNALXXXXXXXXXXPVTKNTLSSIFTDRLPKLLA 60
+T + S SN L V+ T+S+I + LP A
Sbjct: 734 TSVNSSTLITASSSNTL-LSSITSSSAIVSSTTVSNI-SSNLPSATA 778
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.3
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = -2
Query: 383 SSTLKTAALFMTPSSLRYLSKTCSYAAASWSPS---ATSHFINFALRAPNLFISSASKAA 213
SST T + T SSL S T S A+S + S A+S + +L + ++ SS + ++
Sbjct: 94 SSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSS 153
Query: 212 PSRTAISRKATCLAFSESNALXXXXXXXXXXPVTKNTLSS 93
+ ++++ +T S + + + SS
Sbjct: 154 TTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSS 193
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 220 LEAELINKFGALRAKFIKCDVADGDQLAAAYEQVLDKYRRLDGVINNAAVLSVDERSFKK 399
L ++ N FGA +CD+ ++LA +L Y +LD + VL V + +K
Sbjct: 145 LTSDTKNGFGAS----FQCDIGFNNRLAIHNTLLLSSYTKLDARL-KPMVLLVKHWAKRK 199
Query: 400 MIDINFTATVNS 435
I+ + T++S
Sbjct: 200 QINSPYFGTLSS 211
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 355 NNAAVLSVDERSFKKMIDINFTATVNSTLKGLDCMGIDKGGRGGVVVNMSSLLA 516
N + V S DER+ KK NF ++++S L G G G S++++
Sbjct: 95 NVSDVRSYDERNQKKSAFENFVSSMSSFLTGGGSSPTSSYGSGSASPRKSTVIS 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,648
Number of Sequences: 5004
Number of extensions: 44664
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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