Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C18
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77270.1 68414.m08999 expressed protein                             31   0.53 
At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase sm...    31   0.70 
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    28   0.88 
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    29   3.7  
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    29   3.7  
At5g26920.1 68418.m03210 calmodulin-binding protein similar to c...    28   4.9  
At3g62880.1 68416.m07064 mitochondrial import inner membrane tra...    28   6.5  
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont...    28   6.5  
At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly ...    27   8.6  

>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 59  TRYISDRRCANIRRNSAAVVMRVRKKLKTGL-RIRRQDLPQPVPLVLREGQDAQRFENRE 235
           TRY+ D +  N R + +  + R  K+LKT + R     + +  P+V  + +D QR +NRE
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKTEIGRADHNSISKTNPVV--KTKDIQR-KNRE 446


>At5g40942.1 68418.m04973 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase R2 [Nicotiana
           tabacum] GI:1044912; contains Pfam profile PF00268:
           Ribonucleotide reductase, small chain
          Length = 231

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 584 GFRLVFHNLHS-VVARTRVFDAQARVRLCGAIQQARVAVSDAVATA 450
           GF++   N+HS ++ RT+  + + +  +C A++  R  V DA++ A
Sbjct: 101 GFQIAIENIHSEILLRTKFDEDRLKAIVCDAVEIEREFVCDALSCA 146


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 27.9 bits (59), Expect(2) = 0.88
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +3

Query: 288 PVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVADIQPCICTREIKQVCGSDGV 467
           PV G DG     +C    S     S  +   G  Q VK+ D+Q  +C +++K   G    
Sbjct: 81  PVTGKDGGDSAEECLSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLK---GHTST 137

Query: 468 TYGYPCLLNCATQSNPSLSI 527
             G   + NC  +   S+S+
Sbjct: 138 ITG--VMYNCKDEHLASVSV 155



 Score = 21.4 bits (43), Expect(2) = 0.88
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 243 TCEEADPCVCTFIYAPVCGTD 305
           + +  DPCV ++  +P C  +
Sbjct: 27  SADSGDPCVLSYTPSPGCAVN 47


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 111 PSSCA--CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 251
           P+SC   C R   PVCG D  TY   C      D     +++VK+G C+
Sbjct: 68  PASCPVQCFRP-DPVCGEDSVTYWCGC-----ADALCHGVRVVKQGACD 110



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 372 KHRGE-CQEVKVADIQPCICTREIKQVCGSDGVTYGYPCLLNCATQSNPSLSIEHPGPCD 548
           K+RGE C+ +      P  C R    VCG D VTY   C   CA      + +   G CD
Sbjct: 56  KNRGEFCEGIAKPASCPVQCFRP-DPVCGEDSVTYW--C--GCADALCHGVRVVKQGACD 110


>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 144 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 251
           PVCG+DG TY   C      D      ++VK+G C+
Sbjct: 53  PVCGTDGVTYWCGC-----PDAACHGARVVKKGACD 83


>At5g26920.1 68418.m03210 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 492

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 576 VGFPQPSLCCRKDPGVRCSSSGS 508
           VG PQ SL C +DPG   + SGS
Sbjct: 301 VGHPQRSLQCPQDPGFVVTCSGS 323


>At3g62880.1 68416.m07064 mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein
           contains PFam PF02466: Mitochondrial import inner
           membrane translocase subunit Tim17
          Length = 136

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +3

Query: 402 VADIQPCICTREIKQVCGSDGVTYGYPCLLNCATQSNPS 518
           VA     I TR   QV G  G+   +  L NC    NP+
Sbjct: 95  VAGAAVAISTRNWTQVVGMAGLVSAFSVLANCTRTENPN 133


>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
           contains 3 WD-40 repeats (PF00400); identical to
           GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
           (11), 1422-1434 (1997))
          Length = 346

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 492 NCATQSNPSLSIEHPGPCDNRVKVVENQPESNKVIVVDTTMHRLVRVPETWSQ 650
           N   +S+P+LS EHP P    + + + + +   ++   +   RL R+ +  S+
Sbjct: 67  NGEIRSDPNLSFEHPYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSR 119


>At5g44120.3 68418.m05400 12S seed storage protein (CRA1) nearly
           identical to SP|P15455 [Plant Mol Biol 11:805-820
           (1988)]; contains Pfam profile PF00190 Cupin and Prosite
           11-S plant seed storage proteins signature PS00305
          Length = 472

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 282 YAPVCGTDGNTYPNKCSLECSRPLAPSLEMKHRGECQEVKVAD 410
           YA   G  G  +PN+C L+    L PS  +K   E   ++V D
Sbjct: 21  YAAQQGQQGQQFPNECQLDQLNALEPSHVLK--SEAGRIEVWD 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,238
Number of Sequences: 28952
Number of extensions: 326173
Number of successful extensions: 999
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)