Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C15
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.15
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 29 0.35
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.1
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.4
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 2.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 3.3
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 26 4.4
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 26 4.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.4
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 5.8
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 25 5.8
SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c... 25 5.8
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 5.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 5.8
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 7.6
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 30.7 bits (66), Expect = 0.15
Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = +2
Query: 179 KKTKTSVIMDINEMKEFKKLLRTKTNVLVT----YVNDFKSSQSVIDVFKETADSMKG-- 340
+K + IN++ K++L+ + ++L+ +ND +SSQS +D + A+ +
Sbjct: 520 QKAMAPALEKINQLTSEKQILQVELDMLLNKENDLINDVESSQSSLDKLRNDAEENRNIL 579
Query: 341 QATLVIIDCISSEGKKLCKKLK 406
+ L ++ + E K + K ++
Sbjct: 580 SSKLKVLSDLKGEKKDVSKNIE 601
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 29.5 bits (63), Expect = 0.35
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 76 VCLCYAIGNKDALESILECLSHTAATTNRNFYSCKKDQNISHN 204
+C Y +GN + S L+C+ HT T + F S +++I++N
Sbjct: 278 LCGLYNLGNSCYMNSALQCMIHTHELT-KYFLSDSYEKDINYN 319
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.9 bits (59), Expect = 1.1
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +2
Query: 92 LLAIKMH--WNLFWSVFPILLLLQTEIFTHAKKTKTSVIMD-INEMKEF-KKLLRTKTNV 259
L +K H WNLF + P+L QT+ + K + + + + KE +L TK V
Sbjct: 810 LKLLKPHPWWNLFLHLKPLLGTTQTDEYLRRKDALINNLQNQLESTKEVANELTITKERV 869
Query: 260 LVTYVNDFKSSQSVI---DVFKETADS 331
L ND + Q++ D+ E A+S
Sbjct: 870 L-QLTNDLQEEQALAHEKDILVERANS 895
>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 131
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 212 NEMKEFKKLLRTKTNVLVTYVNDFKSSQSVIDVFKETADSMKGQATL 352
NE+ FK+ ++ NVLV+Y ++ + + KE A SM+ ++ L
Sbjct: 66 NEILGFKQDVKLLNNVLVSYSSEELEKRFEESLLKEKATSMEMESKL 112
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.6 bits (56), Expect = 2.5
Identities = 26/98 (26%), Positives = 48/98 (48%)
Frame = +2
Query: 215 EMKEFKKLLRTKTNVLVTYVNDFKSSQSVIDVFKETADSMKGQATLVIIDCISSEGKKLC 394
EMKE ++ L K ++ Y +DF++ + I ++S++ +A L+ SE + L
Sbjct: 372 EMKEARQKLNNKEALISHYDDDFRAKELKI---SRLSESLREKAGLLEFQSSVSEQRDLL 428
Query: 395 KKLKIPSVEPYYIKHYKNGEFHKDYDRSETISSMSNFL 508
+ +I S IK +N F K+ E ++ + N L
Sbjct: 429 YQEQIQS----SIKDMEN-VFRKNEYLMEELNELKNNL 461
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 467 NLYEIRHFYSALCNMVQLMVSLVFCTI 387
N E+ H Y AL +++ L+ + +FCT+
Sbjct: 1117 NEMELGHVYVALRSVIHLLPNELFCTV 1143
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 395 KKLKIPSVEPYYIKHYKNGEFHKDYDRSETISSMSNFLRDP 517
K+L ++ PY I + NG F + Y S T++ + +RDP
Sbjct: 113 KRLARHNIGPYLIGEFSNGRF-EQYMESTTLTCKT--IRDP 150
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 77 YVCVMLLAIKMHWNLFWSVFPILLLLQTEI 166
++ +MLL+ W +FWS +L L T++
Sbjct: 471 FLPLMLLSTYAAWGIFWSFVSLLWLYFTDL 500
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 212 NEMKEFKKLLRTKTNVLVTYVNDFKSSQSVIDVFKETADSMKGQATLVIID 364
N + + KK L NV+ +D +D K+ DS+ Q + V D
Sbjct: 1179 NRLSDMKKSLSDSDNVISVIRSDLVRVNDELDTLKKDKDSLSTQYSEVCQD 1229
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 263 VTYVNDFKSSQSVIDVFKETADSMKGQATLVIIDCISSEGKKLCKKL 403
+ VN F+ + I ++ GQA LV+ID ++ L +KL
Sbjct: 353 IVRVNIFRDHRQTIQYISPEDSNVLGQAELVVIDEAAAIPLPLVRKL 399
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = +3
Query: 405 RYHQLNHIT*STIKMANFIKIMTGVKLSVQCQIFSEILQEIYHGKKIQLA 554
+Y L T M+N +K + +K + +C + + ++E K + L+
Sbjct: 340 KYQSLQGDLSYTDSMSNLLKEFSNIKSAEECDVLQKKIEEFAEAKIVPLS 389
>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 113
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 422 PYYIKHYKNGEFHKDY 469
PYY++H NG +H Y
Sbjct: 97 PYYMQHGPNGNYHHVY 112
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/65 (21%), Positives = 30/65 (46%)
Frame = +2
Query: 110 HWNLFWSVFPILLLLQTEIFTHAKKTKTSVIMDINEMKEFKKLLRTKTNVLVTYVNDFKS 289
H +LF ++ + L+ + + +T + IN+MK +LRT VL ++
Sbjct: 766 HSSLFLNLKFFVSLIIGFLDSPQASLRTKCLRIINQMKTIPSILRTHPEVLAQIISKSND 825
Query: 290 SQSVI 304
+++
Sbjct: 826 QSAIV 830
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 425 YYIKHYKNGEFHKDYDRSETI 487
Y++KH NG + KD+ ++ I
Sbjct: 2961 YWLKHLDNGRYFKDFYKAHII 2981
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 218 MKEFKKLLRTKTNVLVTYVNDFKSSQSVIDVFKETADSMKGQ 343
M K + ++TN++ + + +S + + KE DS+K Q
Sbjct: 319 MSGMKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQ 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,341
Number of Sequences: 5004
Number of extensions: 42728
Number of successful extensions: 131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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