Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C15
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 33 0.12
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 30 1.5
11_06_0181 + 20985960-20987825,20987904-20989169 28 5.9
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 28 5.9
06_03_1194 + 28305388-28305472,28305603-28305682,28305771-283058... 28 5.9
05_04_0310 + 20114415-20117819 28 5.9
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886... 28 5.9
01_01_0360 - 2837046-2837507 27 7.7
01_01_0358 - 2819235-2819696 27 7.7
01_01_0331 + 2685802-2686263 27 7.7
>10_08_0426 - 17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = +2
Query: 275 NDFKSSQSVIDVFKETADSMKGQATLVIIDCISSEGKKLCKKLKIPSVEPYYIKHYKNGE 454
+ F +Q + KE +MKG + +IDC S+E L K + P + +
Sbjct: 959 SQFLQAQDLQIEEKEEESTMKGFPAIYLIDCTSNECHHLLKSVGKEERYPTLLFFPAENK 1018
Query: 455 FHKDYDRSETISSMSNFLRDPSGDLP 532
Y+R ++S++ FL + + P
Sbjct: 1019 SAISYERGISVSNLFEFLESHASNSP 1044
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +2
Query: 152 LQTEIFTHAKKTKTSVIMDINEMK--EFKKLLRTKTNVLVTYVN--DFKSSQSVIDVFKE 319
L E+ + K++ + D E E+ + + N+LV N F+ +SV++V +
Sbjct: 4308 LNDEVEEQEENGKSNTLKDQKENNTCEYTDSIGGEVNLLVIDENLVTFEEERSVLEVIES 4367
Query: 320 TADSMKGQATLVIIDCISSEGKKLCK 397
+ S ++ +DC SEG KL +
Sbjct: 4368 FSVSDAELISIETLDCEQSEGVKLAR 4393
>11_06_0181 + 20985960-20987825,20987904-20989169
Length = 1043
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 79 CLCYAIGNKDALESILECLSHTAATTNRNFYSCKKDQNI 195
C + +G D L + LSH+ ++T +N SC + N+
Sbjct: 647 CGNFCLGETDVLHNPSRYLSHSVSSTGKNGNSCDINPNM 685
>10_08_0429 +
17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +2
Query: 173 HAKKTKTSVIMDINEMKEFKKLLRTKTNVLVTYVNDFKSSQSVIDVFKETADSM 334
+A+ K ++ D NE++ F Y+ DF + +S + +F + DS+
Sbjct: 180 YARIMKIYIVEDRNELESFSPPTTIVNKYYDAYMVDFDNLKSKLQIFSDEFDSL 233
>06_03_1194 +
28305388-28305472,28305603-28305682,28305771-28305839,
28305936-28305993,28306082-28306134,28306229-28306271,
28306360-28306421,28306914-28307027,28307183-28307285,
28307377-28307426,28308138-28308266,28308340-28308591,
28308684-28308763,28309040-28309166,28309247-28309390,
28309849-28310034
Length = 544
Score = 27.9 bits (59), Expect = 5.9
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Frame = +2
Query: 209 INEMKEF-KKLLRTKTNVLVTYVNDFKSSQSVIDVFKETADSMKGQATLV--IIDCISSE 379
++++K+ KK + N V K +I K+ +M G+A +ID + +E
Sbjct: 421 LSDLKDIPKKACDRRINEFVKRARAAKIHAHIIGHLKKEMPAMMGKAKAQQRLIDNLENE 480
Query: 380 GKKLCKKLKIPSVEPYYIKHYKNGEFHKDYDRSETIS-SMSNFLRDPSG-DLP 532
K+ ++ +P+ + Y++H+++ D+ E I M + D G D+P
Sbjct: 481 FAKVQREQHLPAGDFPYVEHFRDVLGGYSIDKFEKIKPKMVQAVDDMLGYDIP 533
>05_04_0310 + 20114415-20117819
Length = 1134
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 143 LLLLQTEIFTHAKKTKTSVIMDINEMKEFKKLLRTK 250
++ LQ I H KK K + D+N+M + ++ L K
Sbjct: 690 MIHLQGSIEFHVKKEKGHTLEDLNDMNDLRRKLHIK 725
>03_02_0493 -
8866685-8866888,8866989-8867059,8867143-8867416,
8867666-8868036,8868127-8868482,8868558-8868630,
8869307-8869412,8869667-8869760,8870616-8870680,
8871655-8871927
Length = 628
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 362 DCISSEGK-KLCKKL-KIPSVEPYYIKHYKNGEFHKDYDRSETISSMSNFLRD 514
DC S G LC+KL +I SVE ++ + N F ++ T+S + +RD
Sbjct: 160 DCDLSHGCIDLCRKLLRINSVERLTVEEFVNHPFLAEHALERTLSRTPSDIRD 212
>01_01_0360 - 2837046-2837507
Length = 153
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 371 SSEGKKLCKKLKIPSVEPYYIKHYK-NGEFHKDYD-RSETISSMSNFLRD 514
S EGKK +K SVE Y I +K + H D S+ +S M++F+ D
Sbjct: 48 SGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 97
>01_01_0358 - 2819235-2819696
Length = 153
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 371 SSEGKKLCKKLKIPSVEPYYIKHYK-NGEFHKDYD-RSETISSMSNFLRD 514
S EGKK +K SVE Y I +K + H D S+ +S M++F+ D
Sbjct: 48 SGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 97
>01_01_0331 + 2685802-2686263
Length = 153
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 371 SSEGKKLCKKLKIPSVEPYYIKHYK-NGEFHKDYD-RSETISSMSNFLRD 514
S EGKK +K SVE Y I +K + H D S+ +S M++F+ D
Sbjct: 48 SGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,439,749
Number of Sequences: 37544
Number of extensions: 220846
Number of successful extensions: 544
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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