Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C15
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.010
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 35 0.052
SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024) 33 0.21
SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56) 31 0.64
SB_32586| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_23426| Best HMM Match : NHL (HMM E-Value=1.1e-19) 28 6.0
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 37.1 bits (82), Expect = 0.010
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Frame = +2
Query: 167 FTHAKKTKTSVIMDINEMKEFKKLLRTKTNVLVTYVNDF-KSSQSVIDVFKETADSM--K 337
F+ + + D+N + F +++R K +LV + + Q ++ + A+++ K
Sbjct: 11 FSAFSSGSANFVYDLNA-QNFDQMIREKDIMLVDFYAPWCHHCQELLPQLEGAANALAAK 69
Query: 338 GQATLVIIDCISSEGKKLCKKLKIPSVEPYYIKHYKNGEFHKDYDRSETISSMSNFLRD- 514
G +DC K LC KI +K +K G++ DY T +++ N++
Sbjct: 70 GLFQFAKVDCTDPRSKVLCDNFKIEGYPS--VKLFKFGKYAGDYIGQRTDAALVNYMESV 127
Query: 515 ---PSGDLPWEEDPTGSA 559
S P+ +P +A
Sbjct: 128 TSTASQQAPFTSEPMNNA 145
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 34.7 bits (76), Expect = 0.052
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +2
Query: 185 TKTSVIMDINEMKEFKKLLRTKTNVLVTYVNDFKSS-QSVIDVFKETADSMKGQ---ATL 352
T +S ++D+ + FK + K +LV + + + + ++ A+++K L
Sbjct: 535 TLSSDVLDLGD-SNFKSGVAGKDIMLVEFFAPWCGHCKRLAPEYETAAEALKKNDPPVPL 593
Query: 353 VIIDCISSEGKKLCKKLKIPSVEPYYIKHYKNGEFHKDYDRSETISSMSNFLRDPSG 523
+DC + GK C K + +K ++NGE KDYD S + +++ +G
Sbjct: 594 AKVDCTEA-GKDTCSKYGVSGYPT--LKIFRNGEMSKDYDGPRDSSGIIRYMKKQAG 647
>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
Length = 1272
Score = 32.7 bits (71), Expect = 0.21
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +2
Query: 62 IFHRLYVCVMLLAIKMHWNLFWSVFPILLLLQTEIFTHAKKTKTSVIMDINEMKEFKKLL 241
I H + + V L A W+V +LL + A+ TK V + ++ + EFKK+
Sbjct: 1031 IIHNIIIKVKLGAPSSEAKSLWTVSSFPILLVELLVDEAQTTKKPVFLQLDAVDEFKKIP 1090
Query: 242 RTKTNVLVTYVNDFKSSQSVIDVFK 316
+ V V N K + D K
Sbjct: 1091 ELE-EVFVDLNNTVKDHTGMTDKAK 1114
>SB_57726| Best HMM Match : YiaAB (HMM E-Value=0.56)
Length = 400
Score = 31.1 bits (67), Expect = 0.64
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +2
Query: 143 LLLLQTEIFTHAKKTKTSVIMDINEMKEFKKLLRTKTNVL-VTYVNDFKSSQSVIDVFKE 319
L LQ+ I + +KT++ I + +E K+ + TK NV+ + DFK + V+K
Sbjct: 97 LSALQSHIKSDKQKTRSRDITESSERKDISQSNITKANVMELMKTKDFKWILLYVGVYKA 156
Query: 320 TADSMKGQATLVIID 364
M L ++D
Sbjct: 157 GEQGMVTMMPLYLLD 171
>SB_32586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +2
Query: 203 MDINEMKEFKKLLRTKTNVLVTYVNDFKSSQSVIDVFKETADSMKGQATLVIIDCISSEG 382
M I++ + L T T +T + F S +S+ D+ ++ + Q V + +S G
Sbjct: 1 MLISKYPALDRYLGTST---LTATHKFDSFKSIQDIPRKRSYVPITQVFTVTVGWVSYHG 57
Query: 383 KKLCKKLKIPSVEPYYI--KHYKN 448
+ KLK P P YI + YKN
Sbjct: 58 TWVTIKLKAPKPRPTYIVTRSYKN 81
>SB_23426| Best HMM Match : NHL (HMM E-Value=1.1e-19)
Length = 566
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = +2
Query: 239 LRTKTNVLVTYVNDFKSSQSVIDVFKETADSMKGQATLVIIDCISSEGKKLCKKLKIPSV 418
L+ + L +ND KS+ + + E A + +I CI++ K+L ++
Sbjct: 88 LKAREKSLANIINDLKSTLNQLGKNAENAKKEVAKEADKLISCINASKKELQSRITTLKD 147
Query: 419 EPYYIKHYKNGEFHKDYDRSETI-SSMSNFLRDPSGDL 529
E + + EF K ++ + + ++ P L
Sbjct: 148 ELAKDMNKEKAEFEKRLKETKKVREDAAKYMNSPDSKL 185
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Frame = +2
Query: 239 LRTKTNVLVTYVNDFKSSQSVIDVFKETADSMKGQATLVIIDCISSEGKKLCKKLKIPSV 418
L+ + L +ND KS+ + + E A + +I CI++ K+L ++
Sbjct: 197 LKAREKSLANIINDLKSTLNQLGKNAENAKKEVAKEADKLISCINASKKELQSRITTLKD 256
Query: 419 EPYYIKHYKNGEFHKDYDRSETI-SSMSNFLRDPSGDL 529
E + + EF K ++ + + ++ P L
Sbjct: 257 ELAKDMNKEKAEFEKRLKETKKVREDAAKYMNSPDSKL 294
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,984,500
Number of Sequences: 59808
Number of extensions: 271646
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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