Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C14
         (503 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.58 
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica...    30   0.77 
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    29   1.3  
At3g62160.1 68416.m06984 transferase family protein low similari...    29   1.8  
At3g52970.1 68416.m05839 cytochrome P450 family protein cytochro...    28   3.1  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    28   4.1  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    27   7.2  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   7.2  
At4g10670.1 68417.m01743 transcription elongation factor-related...    27   9.5  
At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR) domai...    27   9.5  

>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 156 GIVTSLNRRVPREFRYGTQAVCKT 85
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger (C3HC4 type RING
           finger) family protein low similarity to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
           type (RING finger)
          Length = 1648

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 305 ARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQ 448
           AR++I T+KR +          P+    +  +++N L+KL  A C  Q
Sbjct: 719 AREVIETLKRDILKRGHTSSDNPLVTHAEAAKLLNSLLKLRQACCHPQ 766


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 229 EAIRFLDIFEKTFVQSLQKGKFESYGKKIDFHDEKAINFV 348
           EA   LD+  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 153 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 64
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At3g52970.1 68416.m05839 cytochrome P450 family protein cytochrome
           P450 76A2, eggplant, PIR:S38534
          Length = 516

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +1

Query: 307 KKIDFHDEKAINFVGNYWQENADLYE----EEVTKDY 405
           +K  FH EKA    G + +E  ++ E    +E TKDY
Sbjct: 242 RKTQFHVEKAFEIAGEFIRERTEVREREKSDEKTKDY 278


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +1

Query: 19  KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 195
           K  +G     F ++ +    F   + G   +    WY+P+  GY   + ++++P    P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYPMPLPP 444


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 94   NGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHSVKNYEAIRFLDIFE 258
            +GL +IP  +W +  +TG    +   + P     D      V NYE    L+ F+
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFD 1058


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 239 GSWTFLKRLSYSPY 280
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


>At4g10670.1 68417.m01743 transcription elongation factor-related
           low similarity to chromatin-specific transcription
           elongation factor FACT 140 kDa subunit [Homo sapiens]
           GI:5499741
          Length = 470

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/61 (22%), Positives = 33/61 (54%)
 Frame = +2

Query: 251 FLKRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSL 430
           +LK +S+      +S+ + +++ S  ++ +       +RT +  ++KLQ + N+   LSL
Sbjct: 61  YLKEVSFRTKDSRHSSDVVQQVKSLRRKVMARESERAERTSLVNQEKLQIVRNNSKPLSL 120

Query: 431 A 433
           +
Sbjct: 121 S 121


>At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 239

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 278 YRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIIND-LMKLSL 430
           ++K   NR   ++    +  + ++ T+G  + IC     + I ND L+KL+L
Sbjct: 155 FKKTCQNRTEDEINLRRRALIDVANTLGYHSTICKANMTKEITNDVLVKLNL 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,086,679
Number of Sequences: 28952
Number of extensions: 222384
Number of successful extensions: 680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)