Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C12
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   108   1e-24
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815...    27   4.4  
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    26   7.7  
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733...    26   7.7  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  108 bits (260), Expect = 1e-24
 Identities = 47/81 (58%), Positives = 62/81 (76%)
 Frame = +2

Query: 119 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 298
           TVKDV   + VK  +AHLK+ GK+++P+ +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 299 YIRSPVGVKTVTKIFGGRKRN 361
           Y+R  +GV    KI+GGR+RN
Sbjct: 68  YLRQGIGVGGFQKIYGGRQRN 88


>01_06_0213 +
           27580635-27581105,27581206-27581298,27581376-27581540,
           27581640-27581862,27582329-27582429,27582666-27582713,
           27583086-27583172,27583745-27583879,27583985-27584140,
           27585336-27585545,27585641-27586351,27586429-27586974,
           27587872-27588495,27588595-27588699,27590460-27590711,
           27590939-27591766
          Length = 1584

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 220 LYQVHMIW--NLHFADLFQVSGYSFDDFV 140
           L  +H +W  ++ FAD+  +S  +FD+FV
Sbjct: 362 LASLHQVWKFSITFADVLGLSSVTFDEFV 390


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 91  LESIHDAFRYSEG-C*TRQNRQNCSRSLEKDRQSEGSRS 204
           L S  D  R S+G C     R+  SRS E+D  SE  RS
Sbjct: 260 LPSARDRERSSDGECARSSPRRRRSRSHERDHDSERDRS 298


>03_03_0116 -
           14572258-14572881,14573026-14573127,14573253-14573345,
           14573445-14573591,14573690-14573780,14573873-14573961,
           14574061-14574126,14574241-14574762
          Length = 577

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 169 LEKDRQSEGSRSYGLGKDSSFQGT 240
           LE+    +G RSY LGK  SF+ T
Sbjct: 475 LERINSKKGMRSYQLGKQLSFRWT 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,062,704
Number of Sequences: 37544
Number of extensions: 164009
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)