Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C12
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          60   5e-10
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.86 
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.0  
SB_8107| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4)                  27   3.5  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 60.1 bits (139), Expect = 5e-10
 Identities = 22/31 (70%), Positives = 28/31 (90%)
 Frame = +2

Query: 182 GKVKVPDHMDLVKTARFKELAPYDPDWFYVR 274
           G +K+PD +DLVKT +FKELAPYDPDW+Y+R
Sbjct: 3   GNLKIPDWVDLVKTGKFKELAPYDPDWYYIR 33


>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2051

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -1

Query: 274  AYIKPIRVIGSQFLETSCLYQVHMIWNLHFADLFQVSGYSFDD 146
            AY+    ++G +++ET  LY   +IW+L  +   Q+S  SFD+
Sbjct: 1580 AYVPLCGIMGGKYMET-VLYNHDLIWSLCCSHDVQLSHPSFDE 1621


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 119 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 295
           TV  V   K  KT          ++VP  ++ L  T R  E+  +   W  V+C      
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279

Query: 296 IYIRSPVGVKTVTKIFG 346
           IY+ S +  + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296


>SB_8107| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4)
          Length = 136

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = -1

Query: 295 VTQYSSTAYIKPIRVIGSQFLETSCLYQVHMIWNLHFADLFQVSGYSFDDFVLFNILHCN 116
           V    S  Y+K +R + S F    C Y++  ++ +  + L+++S + ++   L+ I   N
Sbjct: 28  VRYMKSVRYMKSVRFMKSVFQYNQCAYEISALYEI--SALYEISAF-YEISALYTISALN 84

Query: 115 GTHHVY 98
               +Y
Sbjct: 85  EISALY 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,659,222
Number of Sequences: 59808
Number of extensions: 191156
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)