Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C11
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    27   1.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   2.0  
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    25   4.6  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   4.6  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   6.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   6.1  

>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 269 LEHEGKCIYALALPIALVRPESP 337
           +EH+GKCI   A P  LV  + P
Sbjct: 309 IEHDGKCIRGRAYPWGLVDIDDP 331


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 194 PSLQRPLSPHITSHVRI 144
           P  +RPL PHIT ++R+
Sbjct: 263 PDNERPLDPHITPYLRL 279


>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +3

Query: 207 MWTRISKKRWTDCVKDYTFNPLSTR 281
           M++ +++  ++DCV+D+T + LS +
Sbjct: 27  MYSTLTQNCFSDCVQDFTSSKLSNK 51


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 287 ISPRAQGIKRIIFHTVRPSFL*YTRPHSYPKPSLQRPLSPHITSHV 150
           I+P  Q ++ ++F  +RPS L   R   Y +      L  HI S V
Sbjct: 640 INPLDQSLRDLLFQVLRPSLL---RDKDYHEHETSFALVEHIESFV 682


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 251 FHTVRPSFL*YTRPHSYPKPSLQRP 177
           F  +RP+   + +  + PKP LQ P
Sbjct: 88  FKVIRPTLFEFLKVENVPKPVLQAP 112


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 193 LPYNVLFLPTSHHMSVSLIITNYKLHFGTPN 101
           L Y  +FLP+S+   +S    N+ L F TP+
Sbjct: 92  LEYLNIFLPSSYKYLLSNSGANFTLQFTTPS 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,850
Number of Sequences: 5004
Number of extensions: 34399
Number of successful extensions: 75
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)