Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C11
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.21 
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)                 27   7.9  
SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 324  DRSPPMQ*VRGHGETNSVPVW 386
            D SPP   + G+GE N VPVW
Sbjct: 1329 DNSPPAGTISGYGEVNRVPVW 1349


>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 168 PHHITCPYH 142
           P+HITCPYH
Sbjct: 700 PYHITCPYH 708


>SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)
          Length = 407

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 287 ISPRAQG-IKRIIFHTVRPSFL*YTRPHSYPKPSLQRPLSPHITSHVRIINNN 132
           +S R Q  IK  IF  + P F   T P S+ +  L+R L+PH  + +R  NNN
Sbjct: 14  LSARKQREIKYKIFSRIPPHFT-GTYPDSHLE-RLRRRLTPHAPAKLRKNNNN 64


>SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
 Frame = -3

Query: 132 LIINYISEHLTNS*VKHV-------SN*DNVRWQH 49
           L INY +EHL    VKH+        + + +RWQH
Sbjct: 408 LCINYANEHLQQFFVKHIFKLEQEQYDKEGIRWQH 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,580,936
Number of Sequences: 59808
Number of extensions: 279600
Number of successful extensions: 464
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)