Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C11
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83228-4|CAB05735.2|  318|Caenorhabditis elegans Hypothetical pr...    29   0.99 
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    28   2.3  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    28   3.0  
AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical...    28   3.0  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z35598-6|CAA84654.1|  580|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U70857-9|AAB09174.1|  261|Caenorhabditis elegans C.elegans homeo...    26   9.2  
AC024824-4|AAY55895.1|  127|Caenorhabditis elegans Hypothetical ...    26   9.2  

>Z83228-4|CAB05735.2|  318|Caenorhabditis elegans Hypothetical
           protein F52F12.4 protein.
          Length = 318

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 163 SHHMSVSLIITNYKLHFGTPNQ*LSQTCF 77
           S+H  V L+I N +L  G+P   +SQ C+
Sbjct: 273 SYHSRVQLMIRNNELEMGSPEVDISQICY 301


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -2

Query: 298 CVNAFPLVLKGLNV*SFTQSVHLFFDIRVHIHTLNLPYNVLFLPTSHHMSVSLI--ITNY 125
           C+  +   L  L    F+++   FF I  H HT  +   V+    S H+ +SL+  I  Y
Sbjct: 23  CLAFYSRRLSSLASLPFSKTTPSFFQIHRHTHTHTILVFVVHFFISIHLVLSLLLKIVIY 82

Query: 124 KLHFGTP 104
            L  G P
Sbjct: 83  SLFSGAP 89


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 292 LRTSLTYCISETGVPQCNK*EGTERRTPCQC 384
           L+  +  CI E     C+   GT R T C+C
Sbjct: 239 LKAEVNECICENPAHVCSLVNGTSRTTQCEC 269


>AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical
           protein Y53F4B.25 protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 218 TRPHSYPKPSLQRPLSPHITSHVRIINNN 132
           T P + P P  Q P+ PH   +V +IN N
Sbjct: 457 TAPPTVPPPPNQAPIVPHQPMYVPLINPN 485


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 314  ALVRPESPNAISKRARRDELRASVGLTR 397
            +LVRP SP +  KR R+D L     L R
Sbjct: 2053 SLVRPASPGSEDKRGRKDALHYIHSLLR 2080


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 314  ALVRPESPNAISKRARRDELRASVGLTR 397
            +LVRP SP +  KR R+D L     L R
Sbjct: 2053 SLVRPASPGSEDKRGRKDALHYIHSLLR 2080


>Z54271-3|CAA91039.1|  713|Caenorhabditis elegans Hypothetical
           protein F21D5.3 protein.
          Length = 713

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 210 WTRISKKRWTDCVKDYTFNPLSTRGNA 290
           W++    +  DC ++Y+FN +S  G+A
Sbjct: 44  WSKREPNQLMDCFQNYSFNHISDPGDA 70


>Z35598-6|CAA84654.1|  580|Caenorhabditis elegans Hypothetical
           protein F10F2.8 protein.
          Length = 580

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 383 HW-HGVRLSVPSYLLHWGTP 327
           +W HGV L+ P ++ HW  P
Sbjct: 505 YWLHGVALNPPDFIEHWADP 524


>U70857-9|AAB09174.1|  261|Caenorhabditis elegans C.elegans homeobox
           protein 33 protein.
          Length = 261

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 189 LTTSSFSPHHITC 151
           L +SSF PHH TC
Sbjct: 3   LNSSSFHPHHFTC 15


>AC024824-4|AAY55895.1|  127|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.5 protein.
          Length = 127

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 159 CDVGRKRTL*GRFRV*MWTRISKKRWTDCVKDYTFNPLSTR 281
           C V +K ++ G  R+  W  IS K+ ++  +     P+S R
Sbjct: 81  CKVDKKHSISGTTRLLKWLGISDKQSSESAQQINKKPISKR 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,732,987
Number of Sequences: 27780
Number of extensions: 196395
Number of successful extensions: 355
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)