Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C09
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    29   0.17 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.70 
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    27   1.2  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   2.8  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   2.8  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   4.9  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   4.9  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    24   6.5  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    24   6.5  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   8.6  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    24   8.6  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    24   8.6  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 29.5 bits (63), Expect = 0.17
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 107 STVLRNYTISTGPASSIQSSQLSTQAIRQPSRPWWEVN 220
           ST++R+ TIST P     S+ ++      P  PW  VN
Sbjct: 456 STIMRSPTISTVPPPKYLSNSINGAKFLNPLAPWTLVN 493


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 70  ITTCLEPGFFSHINGPTELYHKHWTGVVDSIIPIIHP-SDTTTLSPVVGSK 219
           ++  +   FF H NG   L+  H   +  +I   + P  D   L P+  +K
Sbjct: 29  VSPSISRSFFQHSNGSFPLFQNHRKSLPSAIYKSVDPYVDANPLDPLAAAK 79


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 155 STTPVQCLWYNSVGPLM*EKNPGSKHVVIRPMHTIVHHDCSAHPYA 18
           S   V+C+W +   P M  K P S    + P+  IV     +HP++
Sbjct: 45  SNNKVECIWPDR--PNMRGKKPSSAARTLSPLTGIVQPYLGSHPFS 88


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 56  CASDGLPRVWNPD-FSLTSTVL 118
           C++DGL  +W PD FS  S  +
Sbjct: 311 CSTDGLVHIWEPDMFSRPSETI 332


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 234 YLYETFTSHHGREGCRIAWVDNWDD*ID 151
           Y+Y++      +   R  WV+NWD  +D
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWDVTVD 82


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 129 P*ALDRRRRFNHPNYPPK 182
           P + +RRRR NH N PP+
Sbjct: 143 PHSQNRRRRSNHLNNPPE 160


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 58  CIGRITTCLEPGFFSH 105
           C+G ++ CL+ G FSH
Sbjct: 557 CLGIVSGCLDQGDFSH 572


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +2

Query: 56  CASDGLPRVWNPDFSLTSTVLRNYTISTGPASSIQSS----QLSTQAIRQPSRPW 208
           C+ DG  R+W+ D   T + +  Y     P   +Q S      +T +  Q +R W
Sbjct: 421 CSEDGFTRLWSKD---TKSTIVKYAGHNAPIWDVQFSPFGYYFATASHDQTARLW 472


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 39  VVVDNSVHRTDYHVFGTRIFLSHQRSY 119
           +++D+ VH+ D + FGT+++    R Y
Sbjct: 132 ILIDH-VHKNDINRFGTKVYEELARKY 157


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 185 SLGWIIGMIESTTPVQCLWYNSVGPLM*EKNPGSKHVVIRPMHTIVH 45
           ++ W+   IES  P    W  S+  L+    PG  H++ + +HT+++
Sbjct: 413 AIHWV-NEIESN-PKYDNWPKSIQILLKPIYPGQLHMLGKQLHTVIY 457


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 160 IIPIIHPSDTTTLSPVVGSKCLIKISDFKTRRND 261
           IIPI H S  +TLS     K L +++ F+    D
Sbjct: 395 IIPIAHASALSTLSDTSYEKTLNEMNRFRKAVTD 428


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = -1

Query: 248 VLKSLIFMRHLLPTTGERVVVSLGWIIGMIESTTPVQCLWYNSVGPLM*EKNPGSKHVVI 69
           VL + +++    P T  +  +   W IG +E    +Q  + N  G +          +  
Sbjct: 158 VLANPMYILGTAPNTQTKKNLEENWAIGFVEGKAYLQTTFRN--GTMC--------DITK 207

Query: 68  RPMHTIVHHDCSAH 27
           RP H I+ ++CS +
Sbjct: 208 RPRHVILSYECSTN 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,318
Number of Sequences: 5004
Number of extensions: 28973
Number of successful extensions: 96
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)