Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C09
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1014 - 29687343-29687410,29688054-29688191,29689246-296892... 32 0.16
12_02_0191 + 15178717-15179045,15179147-15179546,15179624-151796... 29 1.5
11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664... 28 2.0
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102... 28 2.6
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 28 2.6
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 3.5
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 27 4.6
08_01_0069 - 483701-483997,484113-484325,484548-484727,484815-48... 27 6.1
06_02_0328 - 14448969-14449004,14449046-14449258,14449478-144496... 27 6.1
03_02_0269 + 7001891-7002212,7003598-7004037 27 6.1
>03_05_1014 -
29687343-29687410,29688054-29688191,29689246-29689294,
29689623-29689728,29690184-29690332,29690840-29690921,
29691308-29691360,29691644-29691729,29691855-29691909,
29692179-29692579,29693564-29693660,29694191-29694322,
29694426-29694476,29694659-29694751,29694917-29694992,
29695711-29695856,29696009-29696043,29696056-29696107,
29696290-29696401,29696617-29696813,29697456-29697560,
29697667-29697819,29698317-29698424,29698608-29698752,
29699374-29699432,29701397-29701441,29701677-29701730,
29701901-29702113,29702873-29702958,29704492-29704572,
29704670-29704729,29705599-29705644,29706212-29706286,
29706376-29706512,29708306-29708366,29708726-29708743,
29709710-29709743,29709811-29709902,29709997-29710029
Length = 1260
Score = 31.9 bits (69), Expect = 0.16
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -1
Query: 230 FMRHLLPTT-GERVVVSLGWIIGMIESTTPVQCLWYNSV 117
F+R+++ + GE V + + ++GM ++ PVQ LW N V
Sbjct: 804 FIRYMISSNIGEVVCIFVAAVLGMPDTLVPVQLLWVNLV 842
>12_02_0191 +
15178717-15179045,15179147-15179546,15179624-15179668,
15180506-15180571,15181829-15181890,15182161-15182326,
15183384-15183507,15184177-15184283,15184395-15184505
Length = 469
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = +1
Query: 40 SWWTIVCIGRITTCLEPGFFSHINGPTELYHKHWTGVVDSIIPIIHPSDTTTLSPVVGSK 219
S+ + C+ L PG F H+ G +Y H + + + P ++PV
Sbjct: 385 SYSLLTCMIAQVCDLSPGDFVHVIGDAHVYRTHVEALEEQMRKQPKPFPILKINPVKKDI 444
Query: 220 CLIKISDFKTRRND 261
SDFK R D
Sbjct: 445 DSFVTSDFKLVRYD 458
>11_04_0332 +
16465360-16465769,16465873-16466272,16466379-16466423,
16467113-16467139,16467201-16467266,16467889-16467950,
16468049-16468123,16468218-16468383,16468611-16468734,
16469737-16469843,16469992-16470102
Length = 530
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 82 LEPGFFSHINGPTELYHKHWTGVVDSIIPIIHPSDTTTLSPVVGSKCLIKISDFK 246
L PG F H+ G +Y H + + I + P ++P+ SDFK
Sbjct: 460 LSPGEFVHVIGDAHVYRTHVRALEEQIQKLPKPFPVLKINPLKKDIDSFVASDFK 514
>05_01_0154 +
1020650-1022050,1022304-1022373,1022496-1022617,
1022753-1023031,1023402-1023779,1024079-1024188,
1024394-1024622,1024725-1025303
Length = 1055
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 230 FMRHLLPTT-GERVVVSLGWIIGMIESTTPVQCLWYNSV--GP--LM*EKNPGSKHVVIR 66
F+R+++ + GE + L +G+ E PVQ LW N V GP NP K ++ +
Sbjct: 785 FIRYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKK 844
Query: 65 P 63
P
Sbjct: 845 P 845
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 27.9 bits (59), Expect = 2.6
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 230 FMRHLLPTT-GERVVVSLGWIIGMIESTTPVQCLWYNSV--GP--LM*EKNPGSKHVVIR 66
F+R+++ + GE + L +G+ E PVQ LW N V GP NP K ++ +
Sbjct: 793 FIRYMISSNIGEVASIFLTSALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKK 852
Query: 65 P 63
P
Sbjct: 853 P 853
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 171 YPPKRYDNPLARGGK 215
YPPKRY NP+ G+
Sbjct: 859 YPPKRYSNPVGPAGR 873
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 131 WYNSVGPLM*EKNPGSKHVVIRPMHTIVHHDCSAH 27
WY S G + E+N G H V + V +C+ H
Sbjct: 1690 WYTSQGIVGSEENSGEGHCVCSSDNGCVPRECTCH 1724
>08_01_0069 -
483701-483997,484113-484325,484548-484727,484815-484985,
485655-485764,485914-485989
Length = 348
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 203 GERVVVSLGWIIGMIESTTPVQCLWYNSVGPLM*EKNPGSKHVVIRPMHTIVHHDC 36
G+ + V + +I+S ++CLW V LM N +H+V + DC
Sbjct: 101 GQTLAVGKQEYVTIIQSNLGIKCLWNAEVMELMWGLNNLKEHLVPDGKSELSKEDC 156
>06_02_0328 -
14448969-14449004,14449046-14449258,14449478-14449657,
14449740-14449910,14450898-14450942
Length = 214
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 203 GERVVVSLGWIIGMIESTTPVQCLWYNSVGPLM*EKNPGSKHVVIRPMHTIVHHDC 36
G+ + V + +I+S ++CLW V LM N +H+V + DC
Sbjct: 54 GQTLAVGKQEYVTIIQSNLGIKCLWNAEVMELMWGLNNLKEHLVPDGKSELSKEDC 109
>03_02_0269 + 7001891-7002212,7003598-7004037
Length = 253
Score = 26.6 bits (56), Expect = 6.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 213 SHHGREGCRIAWVDNWDD 160
+ H R+ R+AW D W D
Sbjct: 62 TEHARQRMRVAWADGWVD 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,382,691
Number of Sequences: 37544
Number of extensions: 184484
Number of successful extensions: 444
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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