Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C09
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.50 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   0.66 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   4.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   8.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   8.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   8.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = +2

Query: 71  LPRVWNPDFSLTSTVLRNYTISTGPASSIQSSQLSTQAIRQPSRPWWEVNV 223
           +P  W  + S     LR+  IS  P        L    I     P WEVN+
Sbjct: 82  MPDGWETEISDQMLELRDLPISGKPFQIRMKHGLIRDLIVDRDVPTWEVNI 132


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 0.66
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 12  FSRVWMCRTVVVDNSVHRTDYHVFGTRIFLSH 107
           ++RVW   T++ +N+  +    V  T + +SH
Sbjct: 84  YNRVWRPDTILYNNADPQYSSAVINTNVIVSH 115


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 68  RPMHTIVHHDCSAHPYAR 15
           +P H  +HH  S HP A+
Sbjct: 808 QPPHQQLHHHQSTHPQAQ 825


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 149 TPVQCLWYNS 120
           TP QCL+YN+
Sbjct: 332 TPDQCLFYNT 341


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 107 STVLRNYTISTGPASSI 157
           +TVL   TISTG  SS+
Sbjct: 279 TTVLTMTTISTGVRSSL 295


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 77  RVWNPDFSLTSTVLRNYTI 133
           +VW PD  L +    NY +
Sbjct: 107 KVWKPDIVLFNNADGNYEV 125


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +2

Query: 80  VWNPDFSLTSTVLRNYTISTGPASSIQSSQL 172
           +W PD  L +    NY ++    +++  S L
Sbjct: 110 IWRPDIVLYNNADGNYEVTLMTKATVYYSGL 140


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 123 FRRTVDVREKSGFQTRGNPSDAHYC 49
           F   V +R    ++T GNP +  YC
Sbjct: 124 FYLLVSLRIDLPWRTCGNPWNTRYC 148


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 123 FRRTVDVREKSGFQTRGNPSDAHYC 49
           F   V +R    ++T GNP +  YC
Sbjct: 177 FYLLVSLRIDLPWRTCGNPWNTRYC 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,408
Number of Sequences: 438
Number of extensions: 2117
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)