Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C07
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 29 0.46
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 28 0.81
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 5.7
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 25 5.7
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 7.5
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 7.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 25 10.0
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 25 10.0
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 10.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 10.0
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.46
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +2
Query: 101 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDXYTNKKAVEEFL 247
VER+K++ +L Q D + ++DE YY + D Y+ EA +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.3 bits (60), Expect = 0.81
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 116 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVE 238
K L + + + YYK+ K Y +AN D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 101 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 250
+ R+KK+L+L + D + V+DE Y + D +++ K FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 436 NIICVQELSLIXVHTSESGTLVEGFKVFSIVEQVEKSNS 320
++ICVQEL + + +VEGF + ++ K S
Sbjct: 36 DVICVQELKMQKDSFPQQYAVVEGFDSYFTFPKIRKGYS 74
>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 132
Score = 25.0 bits (52), Expect = 7.5
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 5 VLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDEYY 172
++ A +I +++ + +H +D V + QK+ S D D+ V DE+
Sbjct: 30 IMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDEFM 89
Query: 173 KIGKDYDVEA 202
+I +++ ++A
Sbjct: 90 QIKEEFPMKA 99
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 432 ILQLSSAMILMDSFYQLLMKFIHNSSXIWTLYL 530
++ L+ A L + YQ S +WTLYL
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYL 175
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 404 NEGQFL-YAYYIAVIQRNDTHG 466
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 324 LLFSTCSTMLKTLKPSTRVPLSLVCTXMRDS 416
+L CS + ++ PL+LVCT +D+
Sbjct: 253 ILVYRCSNAVNCVQLFDETPLALVCTDSKDA 283
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 101 VERQKKVLSLFQDVDQVNVDDEYY 172
+ER+KK L+L + D + V+DE Y
Sbjct: 221 LERRKKFLTLAKKYDIIIVEDEPY 244
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 110 QKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDXYTNK 226
Q+ + S+ D Q+++DD YKI E N D +K
Sbjct: 38 QEIIHSISPDTFQLDIDDILYKIYSKIPPEENNDALFSK 76
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 24.6 bits (51), Expect = 10.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 143 DQVNVDDEYYKIGKDYDVEANIDXYTNKKAVEEFLK 250
DQ N + K+ + + E N D Y NK A++EFL+
Sbjct: 991 DQKNALEIICKVIR-FPGENNADVYFNKCAIKEFLE 1025
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,163
Number of Sequences: 5004
Number of extensions: 41356
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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