Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C06
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0474 - 3666236-3668050 31 0.57
04_04_0786 - 28052981-28053040,28053123-28053222,28053447-280535... 30 0.99
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107... 29 1.7
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185... 27 5.3
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715 27 5.3
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269... 27 7.0
05_03_0245 + 10890555-10890962 27 7.0
05_03_0244 + 10857139-10857516 27 7.0
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 27 7.0
>11_01_0474 - 3666236-3668050
Length = 604
Score = 30.7 bits (66), Expect = 0.57
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 143 PCNAFGGKCTEAETDC-PAGTHITAKGLC 226
PC+A GG C E E C + H+ LC
Sbjct: 47 PCSAAGGSCAETEASCRNSAGHVVRLSLC 75
>04_04_0786 -
28052981-28053040,28053123-28053222,28053447-28053574,
28053654-28053821,28053901-28054013,28054135-28054287,
28054385-28054528,28054794-28055529
Length = 533
Score = 29.9 bits (64), Expect = 0.99
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +2
Query: 206 ITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYKNADD 355
ITAKG +Q V C +L ++ C G D PEN +ADD
Sbjct: 181 ITAKGSYSERQAAAV--CRDILTVVHVCHFMGVIHRDLKPENFLLASADD 228
>10_08_0781 +
20509033-20509714,20510048-20510191,20510604-20510719,
20511356-20511520,20511822-20512043,20512613-20512735
Length = 483
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 236 QHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYKNADD 355
+ + E ++ I TC SHG D PEN +ADD
Sbjct: 171 ERKAAELIKIIVGIIETCHSHGVMHRDLKPENFLLLDADD 210
>06_03_0810 - 24817268-24817350,24817547-24817697,24818441-24818542,
24818722-24818802,24818900-24819020,24819284-24819401,
24819514-24819637,24819898-24819963,24820117-24820407,
24820455-24820592,24820967-24821116,24821240-24821410,
24821543-24821746,24821880-24822104,24822461-24822595,
24822995-24823096,24823586-24823882,24823979-24824167,
24824581-24824628,24824872-24825070,24825501-24825730,
24826373-24826568,24826695-24826882
Length = 1202
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 197 GTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLTYKN 346
G ++ A PS+ H+ V+ C VLR +++ + E +DR L K+
Sbjct: 1052 GWYVIAVTSTPSKVHKAVDACKGVLRGLHSNKIVERE-LDRAKRTLLMKH 1100
>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
Length = 1536
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +2
Query: 104 IEPSKATLVYDEQPCNAFGGKCT------EAETDCPAGTHITAKGLCPSQQHRGV 250
I+P A EQPC + GG C+ + E C + + C S+ + +
Sbjct: 447 IQPGNAVTNLKEQPCKSSGGTCSPELHTVKEEKSCSSSQSLNNSQSCSSEHAKTI 501
>10_01_0256 -
2688172-2688786,2690779-2690857,2691567-2691652,
2693046-2693113,2695175-2695244,2696191-2696320,
2696924-2697906
Length = 676
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 155 FGGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCHS 265
FGG A C AG A + PS +GV CCH+
Sbjct: 77 FGGAPGGARFVC-AGAGPLALSVPPSVSRQGVPCCHT 112
>05_03_0245 + 10890555-10890962
Length = 135
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +2
Query: 158 GGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLT 337
GG+C + +G H G C G CC + + R + G C ++C T
Sbjct: 74 GGRCVDTGA---SGEHC---GGCNKACKHGRSCCGGRCVDLLSDRDNCGSCSNQCSNKCT 127
Query: 338 YKNAD 352
Y D
Sbjct: 128 YGFCD 132
>05_03_0244 + 10857139-10857516
Length = 125
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +2
Query: 158 GGKCTEAETDCPAGTHITAKGLCPSQQHRGVECCHSVLRKINTCRSHGGECMDRCPENLT 337
GG+C + +G H G C G CC + + R + G C ++C T
Sbjct: 65 GGRCVDTGA---SGEHC---GGCNKACKHGRSCCGGRCVDLLSDRDNCGSCSNQCSNKCT 118
Query: 338 YKNAD 352
Y D
Sbjct: 119 YGFCD 123
>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 27.1 bits (57), Expect = 7.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 215 KGLCPSQQHRGVECCHSVLRKI 280
+ P+Q +RG +CCH+ R I
Sbjct: 1626 RSFTPAQDNRGSDCCHACERHI 1647
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,768,983
Number of Sequences: 37544
Number of extensions: 190660
Number of successful extensions: 457
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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