Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C05
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 167 1e-42
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.027
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 25 5.4
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 5.4
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 7.2
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 7.2
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 9.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.5
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 9.5
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 167 bits (405), Expect = 1e-42
Identities = 79/148 (53%), Positives = 102/148 (68%)
Frame = +2
Query: 95 SLRNVIEQTSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNISDAFDQK 274
+L N++EQTSL+WIF SCSLA+Q+SKVR SVL+ISTDPAHN+SDAF K
Sbjct: 9 TLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTK 68
Query: 275 FSKVPTKVQGFDNLYAMEIDPNIGLTELPEEYFEGQTEAMRLGKGVMQEIVGAFPGIDEA 454
F K KV GFDNL AMEIDPN+ + E+ E+ Q G+MQ++ PGIDEA
Sbjct: 69 FGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAFTIPGIDEA 126
Query: 455 MSYAEVMKLVQGMNFSAVVFDTAPTGHT 538
+++AE++K ++ M F V+FDTAPTGHT
Sbjct: 127 LAFAEILKQIKSMEFDCVIFDTAPTGHT 154
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 33.1 bits (72), Expect = 0.027
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 8/169 (4%)
Frame = -1
Query: 519 VSNTTALKFIPCTSFITSA*LIASSIPGNA----PTISCMTPFPKR-IASVCPSKYS--S 361
VS +T + TS I S+ + + P + T+S ++ K+ ASV S S S
Sbjct: 413 VSTSTLISASDSTSIIVSSYVSTVTQPASTRVQTTTVSSISTSVKQPTASVASSSVSVPS 472
Query: 360 GNSVNPILGS-ISIAYKLSKP*TFVGTLENF*SNASEIL*AGSVEIIKTDSRTLDNCTAR 184
+SV P + IS + S P + + T S S L +GS I T S T +
Sbjct: 473 SSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIIS 532
Query: 183 LQLQVVLPTPPFPPTKIHLKDVCSITFLKEGXKDGSSLVSSIVITNLIS 37
+ VL + PT SIT + G S + +++++S
Sbjct: 533 SPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILS 581
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 50 VITMEDTNELPSLXPSLRNVIEQTSL 127
V+T EDT E+ S+ P+L + SL
Sbjct: 148 VLTDEDTEEVASIQPALSTSVSSLSL 173
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = -3
Query: 355 FCQSYIGIYFHSIQVIKALNFCRNLGKFLI 266
+ Q+++ + + S V+KALN +++ +FL+
Sbjct: 712 YWQTFVSLPYQSKDVLKALNVVQSILEFLV 741
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -1
Query: 513 NTTALKFIPCTSFITSA*LIASSIPGNAPTISCMTPFPK 397
+T+ + I TSF+T + ++ A +S + P P+
Sbjct: 62 HTSVSETITSTSFVTETTTVTPTVTATAQELSTLNPHPE 100
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = -3
Query: 328 FHSIQVIKALNFCRNLGKFLIKCIRNIMSWICRNYQN*FADLG*LHSKATTAGSLTNTAF 149
+H++++ + +C + GK + C+ +S R+Y +++L + A + LT +
Sbjct: 91 YHNLRLQRLRQYCWSGGKRMESCLDTSLSTYERDYLTRYSELLAAYKGAWSELDLTGSLV 150
Query: 148 P 146
P
Sbjct: 151 P 151
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 206 VRESVLIISTDPAHNISDAFDQKFSKVPTKVQGFDNLYAMEI 331
V S ++TD H + + F+K + DN+YA I
Sbjct: 127 VHRSSSWLTTDGTHQLLSLMETNFNKFIAAKETIDNVYAQII 168
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 408 PFPKRIASVCPSKYSSGNSVNP 343
PFP+ + SV Y+SG++ NP
Sbjct: 353 PFPESLDSVAYVLYTSGSTGNP 374
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 474 ITSA*LIASSIPGNAPTISCMTP 406
+TS+ + + + GNA TIS TP
Sbjct: 13 VTSSLITTAPVTGNAATISTFTP 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,200,108
Number of Sequences: 5004
Number of extensions: 45153
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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