Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C05
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723... 162 1e-40
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722... 64 9e-11
02_05_0546 + 29889861-29890182,29891057-29892798 36 0.016
02_05_0571 - 30072521-30072595,30072681-30072749,30072826-300729... 31 0.59
12_02_1083 - 25922670-25922867,25922962-25923213,25923674-259238... 29 2.4
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160... 29 3.1
11_08_0012 + 27623055-27623277,27623291-27625165,27625456-276255... 28 4.1
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602... 28 4.1
07_03_1036 - 23430643-23431311,23431441-23431668 28 5.5
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017 28 5.5
04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880 28 5.5
01_07_0065 - 40851101-40851247,40851352-40851495,40851781-408518... 28 5.5
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 27 7.2
04_03_0350 + 14755619-14755692,14755697-14755883,14755964-147560... 27 9.6
>09_05_0014 -
20071514-20071690,20071779-20071894,20072177-20072315,
20072649-20072672,20072879-20072989,20073089-20073239,
20073357-20073478,20074287-20074556
Length = 369
Score = 162 bits (394), Expect = 1e-40
Identities = 77/149 (51%), Positives = 103/149 (69%)
Frame = +2
Query: 92 PSLRNVIEQTSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNISDAFDQ 271
P++RN++EQ SL+W+F CS L++ L+ R+SVL+ISTDPAHN+SDAF Q
Sbjct: 13 PTVRNLLEQESLKWVFVGGKGGVGKTTCSSILSILLASARQSVLVISTDPAHNLSDAFQQ 72
Query: 272 KFSKVPTKVQGFDNLYAMEIDPNIGLTELPEEYFEGQTEAMRLGKGVMQEIVGAFPGIDE 451
+F+K PT V+GF+NLYAMEIDP + + E E G + E+ A PG+DE
Sbjct: 73 RFTKFPTLVRGFNNLYAMEIDPKVENDDFANEGME----------GFLSELTNAIPGVDE 122
Query: 452 AMSYAEVMKLVQGMNFSAVVFDTAPTGHT 538
AMS+AE++KLVQ M++S VVFDTAPTGHT
Sbjct: 123 AMSFAEMLKLVQTMDYSVVVFDTAPTGHT 151
>02_05_0729 -
31271566-31271730,31271799-31271933,31272210-31272284,
31273003-31273068,31273154-31273222,31273303-31273377,
31273518-31273628,31273947-31274009,31274064-31274453
Length = 382
Score = 63.7 bits (148), Expect = 9e-11
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 33/155 (21%)
Frame = +2
Query: 173 CSCSLAVQLSKVRESVLIISTDPAHNISDAFDQKFSKVPTKVQGFDN------------- 313
C+ SLAV+ + L++STDPAH++SD+F Q S V + F++
Sbjct: 85 CAASLAVRFANNGHPTLVVSTDPAHSLSDSFAQVASPVEHLLSRFEDLSGGALVPVEGPE 144
Query: 314 --LYAMEIDPNIGLTEL----PEEYFEGQTEAM-RLGKGVMQEIVGAF----------PG 442
L+A+EI+P E + G + M +G GV+ E +G PG
Sbjct: 145 APLFALEINPEKAREEFRAASQKNGGTGVKDFMDGMGLGVLAEQLGELKLGELLDTPPPG 204
Query: 443 IDEAMSYAEVMKLVQGMNFS---AVVFDTAPTGHT 538
+DEA++ ++VM+ ++ +S +VFDTAPTGHT
Sbjct: 205 LDEAIAISKVMQFLEAQEYSMFRRIVFDTAPTGHT 239
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 36.3 bits (80), Expect = 0.016
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -1
Query: 528 VGAVSNTTALKFIPCTSFITSA*LIASSIPGNAPTISCMTPFPKRIASVCPSKYSSGNSV 349
VG N A+ +P T+ +TSA L+ PG++P S P + + PS S V
Sbjct: 38 VGVPRNLPAVAALPATAPVTSASLVTLKPPGSSPVKSVNNPSVVTMPHMAPSHLKSDKGV 97
Query: 348 N 346
N
Sbjct: 98 N 98
>02_05_0571 -
30072521-30072595,30072681-30072749,30072826-30072900,
30072981-30073050,30073168-30073279,30073576-30073674,
30073847-30073939,30074994-30075062,30076845-30076911
Length = 242
Score = 31.1 bits (67), Expect = 0.59
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 176 SCSLAVQLSKVRESVLIISTDPAHNISDAFDQKFSKV 286
+C +A L ++ E + I+S DP I ++FD+ F V
Sbjct: 120 NCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYV 156
>12_02_1083 -
25922670-25922867,25922962-25923213,25923674-25923856,
25923945-25924015,25924058-25924169,25924524-25924583,
25924665-25924780,25925172-25925244
Length = 354
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 517 VKYNSTEVHTLYKFHHLCITHCLINTWECSYYFLH 413
+ N T+V + +L T C ++ WECS YF++
Sbjct: 277 ISNNGTKVFLFPQVKNLA-TGCCLSAWECSGYFIY 310
>11_08_0011 +
27612206-27615110,27615211-27615538,27615989-27616059,
27616962-27617118,27617676-27617709
Length = 1164
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 263 FDQKFSKVPTKVQGFDNLYAMEIDPNIGLTELPEEYFEGQTEAMRLGKGVMQEIVGAFPG 442
F+Q ++PT++QG +L + I N +P + F RL G + G PG
Sbjct: 159 FNQLSGRIPTELQGLRSLININIQTNYLTGLVPNDLFNHTPSLRRLIMG-NNSLSGPIPG 217
>11_08_0012 +
27623055-27623277,27623291-27625165,27625456-27625567,
27625586-27626130,27626305-27626591,27626770-27626805
Length = 1025
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +2
Query: 263 FDQKFSKVPTKVQGFDNLYAMEIDPNIGLTELPEEYFEGQTEAMRLGKGVMQEIVGAFPG 442
F+Q + +P ++QG +L +M + N +P++ F L G + G PG
Sbjct: 155 FNQLYGPIPAELQGLHSLGSMNLRHNYLTGSIPDDLFNNTPLLTYLNVG-NNSLSGLIPG 213
>06_02_0051 -
10957857-10958127,10959791-10960035,10960160-10960229,
10960319-10960986
Length = 417
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 179 CSLAVQLSKVRESVLIISTDPA--HNISDAFDQKFSKVPTKVQGFDNLYAMEIDPNIGLT 352
C++A++L++ +++++ DPA IS + +V TK FD A D + L
Sbjct: 72 CAMALELARRGLNLVLVGRDPARLREISGTIRSRHGRVQTKAVVFDLSLASTPDGDQPLR 131
Query: 353 ELPE 364
L E
Sbjct: 132 RLRE 135
>07_03_1036 - 23430643-23431311,23431441-23431668
Length = 298
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -1
Query: 429 PTISCMTPFPKRIASVCPSKYSSGNSVNPILGS--ISIAYKLSKP 301
P+ SC+ PF + + ++ P + SS V P L S S K+ KP
Sbjct: 133 PSASCLLPFLRGLPNLPPLRVSSSAPVTPPLSSPTASRPPKIRKP 177
>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
Length = 824
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 356 LPEEYFEGQTEAMRLGKGVMQEIVGAFPGIDEAMSYAEVMKLVQGMNFSAVV 511
+ +YF G + + GV E VGA I + +S V K+ G F+ V
Sbjct: 531 IENQYFLGSSYCWKPNDGVKPEDVGALHLIPKELSMKVVSKIEAGERFTVYV 582
>04_04_1686 + 35362454-35362781,35362891-35363165,35363770-35363880
Length = 237
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 59 MEDTNELPSLXPSLRNVIEQTSLRWIF 139
M+ +ELPSL P+L+ VI Q + R ++
Sbjct: 208 MDCYSELPSLAPTLKLVIRQLAARTVY 234
>01_07_0065 -
40851101-40851247,40851352-40851495,40851781-40851872,
40851954-40852035,40852127-40852193,40852284-40852375,
40852470-40852586,40852764-40852881,40852969-40853161,
40853258-40853339,40853607-40853744,40853829-40854023
Length = 488
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 487 LYKFHHLCITHCLINTWECSYYFLHDSLS*THSFSLPFEILLW 359
LY F ++C+T C +YFL D L + PF L W
Sbjct: 369 LYTFSYICVTAGAAGIVFCMFYFLVDIL----NLHYPFAPLKW 407
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 254 KYYE-LDLSKLSKLIRGPWIIAQQ 186
K+YE LD LSK+ RGPW I ++
Sbjct: 242 KHYEVLDAKVLSKIPRGPWRIRRK 265
>04_03_0350 +
14755619-14755692,14755697-14755883,14755964-14756072,
14756157-14756379,14756716-14756794,14757222-14757273,
14757354-14757416,14757519-14757616,14757970-14758031,
14758066-14758159,14758430-14758509,14758617-14758686,
14758807-14758864,14758973-14759037,14759127-14759221,
14759318-14759402
Length = 497
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 401 GKGVMQEIVGAFPGIDEAMSYAEVMKLVQGMNFSAVV 511
G+G Q++ + G+ E + YA MK V+G ++ +V
Sbjct: 95 GRGRKQDMDEMYFGVYEQLLYARKMKPVEGAQWTGIV 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,821
Number of Sequences: 37544
Number of extensions: 264329
Number of successful extensions: 810
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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