Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C05
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   8e-16
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_17803| Best HMM Match : SRCR (HMM E-Value=0)                        28   5.6  
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 28   5.6  
SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.4  
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)          27   9.8  

>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 34/49 (69%), Positives = 43/49 (87%)
 Frame = +2

Query: 392 MRLGKGVMQEIVGAFPGIDEAMSYAEVMKLVQGMNFSAVVFDTAPTGHT 538
           M +GK ++ E++GAFPGIDEAMS+AEVM+LV  M+FS V+FDTAPTGHT
Sbjct: 2   MSMGKAMISELLGAFPGIDEAMSFAEVMRLVNSMDFSTVIFDTAPTGHT 50


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 489  PCTSFITSA*LIASSIPGNAPTISCMTPFPKRIASVCPSKYSS 361
            PC +FI SA   +  +  N     C    PK  A VC + + +
Sbjct: 1766 PCQNFICSAPYSSCEVKDNEAVCECPKDCPKEDAEVCGTNWKT 1808


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 428  GAFPGIDEAMSYAEVMKLVQGMNFSAVVFDTAPTGHT 538
            GA PG+D     AE+ + ++  N +A     A  GH+
Sbjct: 905  GALPGVDNMREQAELNEELESKNTAATKIQAAYRGHS 941


>SB_17803| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1428

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 292 CRNLGKFLIKCIRNIMSWICRNYQN*FADLG*LHSKATTAGSLTNTAFPTNKNPSQRCLF 113
           CR   K L++CI  + S  C N++      G +  + TT    T T  PT +  + R L+
Sbjct: 600 CRGTEKSLLRCIHRLGSSNCNNFET----AGVVCERPTT-DPPTTTPIPTTEATTTRSLY 654


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 201 DNCTARLQLQVVLPTPPFPPTKIHLKDVCSITFLKEGXKDGSSLV 67
           D   +  Q   +LP+PP  P K H  D    T      +D + LV
Sbjct: 474 DRRLSSAQYTSILPSPPLSPQKTHAGDFGCKTLSSSFERDSNQLV 518


>SB_29857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 124  FEMDFCWWERRC 159
            F +D CWWE+ C
Sbjct: 1239 FNLDLCWWEKVC 1250


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 305 FDNLYAMEIDPNIGLTELPEEYFEGQTEAMRLGK 406
           FD LY MEI+P   ++ + E+  +G    +RL K
Sbjct: 510 FDYLYTMEIEPERDMSIIGEDEEDGDIGKIRLVK 543


>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
          Length = 190

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 456 IASSIPGNAPTISCMTPFPKRIASVCPSKY 367
           I   +P  A T  CM+P P+++A  C S++
Sbjct: 65  IPRHLPLLAVTAECMSPAPEKLAKNCGSRH 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,882,052
Number of Sequences: 59808
Number of extensions: 321290
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)