Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C05
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...   169   1e-42
U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical pr...    32   0.23 
AC006775-1|AAF60622.2|  551|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF067220-6|AAC16980.2|  303|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score =  169 bits (411), Expect = 1e-42
 Identities = 87/161 (54%), Positives = 107/161 (66%), Gaps = 10/161 (6%)
 Frame = +2

Query: 86  LXPSLRNVIEQTSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNISDAF 265
           L  S++N++EQ +L+WIF           CSCSLA QLSKVRE VL+ISTDPAHNISDAF
Sbjct: 5   LEASIKNILEQKTLKWIFVGGKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHNISDAF 64

Query: 266 DQKFSKVPTKVQGFDNLYAMEID--PNIGLTELP--EEYF------EGQTEAMRLGKGVM 415
            QKF+K PT V+GF NL+AMEID  PN    E+   EE        EG +    +GK  +
Sbjct: 65  SQKFTKTPTLVEGFKNLFAMEIDSNPNGEGVEMGNIEEMLQNAAQNEGGSGGFSMGKDFL 124

Query: 416 QEIVGAFPGIDEAMSYAEVMKLVQGMNFSAVVFDTAPTGHT 538
           Q   G  PGIDEAMS+ E++KL+  ++F  VVFDTAPTGHT
Sbjct: 125 QSFAGGLPGIDEAMSFGEMIKLIDSLDFDVVVFDTAPTGHT 165


>U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical
           protein F47G3.2 protein.
          Length = 192

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 470 VMKLVQGMNFSAVVFDTAPTGHT 538
           +++L+  + F  VVFDTA TGHT
Sbjct: 1   MIELIDSLGFDVVVFDTASTGHT 23


>AC006775-1|AAF60622.2|  551|Caenorhabditis elegans Hypothetical
           protein Y46H3B.2 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 195 CTARLQL--QVVLPTPPFPPTKIHLKDVC 115
           CT   Q+  Q VLPTPP P   I  +D C
Sbjct: 372 CTTERQVLCQYVLPTPPTPNPTISWQDPC 400


>AF067220-6|AAC16980.2|  303|Caenorhabditis elegans Hypothetical
           protein C33E10.8 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 355 FCQSYIGIYFHSIQV-IKALNFCRNLGKFLIKCIRN 251
           F +  IG+ FH I +    LNF R +GK+LI  I N
Sbjct: 132 FFRELIGVRFHRITLQTSNLNF-RRIGKWLILMINN 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,019,369
Number of Sequences: 27780
Number of extensions: 251336
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)