Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C05
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 161 QHRLSHQQKSISKMFVQ*RFLKKVXKMVVH 72
           +HR+ H Q  IS+     R L+K     VH
Sbjct: 429 EHRIRHSQIGISRAMSALRILEKHELANVH 458


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 466 RGDETCTRYELQCCCI*HC 522
           R ++   RYE  C  + HC
Sbjct: 731 RSEQFLCRYEAHCFALCHC 749


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 20  TIKFC*EIKFVITMEDTNELPSLXPSLRNVIEQTSLRW 133
           T+K    + F+I   DT E      SL +  ++   +W
Sbjct: 158 TLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQW 195


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 509 QQH*SSYLVQVSSPLHNS 456
           QQH + +LV  + P+H++
Sbjct: 280 QQHKAMFLVVTAQPVHSA 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,315
Number of Sequences: 438
Number of extensions: 3408
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)