Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C04
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0431 - 15858381-15858529,15858864-15858935,15859045-158591...    28   3.8  
04_03_0421 - 15725045-15725193,15725528-15725599,15725709-157257...    28   3.8  
02_04_0223 + 21047240-21047304,21047577-21047706,21048783-210488...    27   6.6  
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086...    27   8.7  

>04_03_0431 -
           15858381-15858529,15858864-15858935,15859045-15859120,
           15860651-15860734
          Length = 126

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 221 GCIIRSNSHCLNNGFRRHWYKRAVVLLILL 132
           G     ++H +++G+R HW K   VLL+ +
Sbjct: 90  GATYTVDAHNISSGWRFHWQKHLAVLLVTM 119


>04_03_0421 -
           15725045-15725193,15725528-15725599,15725709-15725784,
           15728607-15728679,15728919-15728983,15729423-15729681,
           15729761-15729931,15730014-15730846,15731097-15731390,
           15731469-15731939
          Length = 820

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 221 GCIIRSNSHCLNNGFRRHWYKRAVVLLILL 132
           G     ++H +++G+R HW K   VLL+ +
Sbjct: 784 GATYTVDAHNISSGWRFHWQKHLAVLLVTM 813


>02_04_0223 +
           21047240-21047304,21047577-21047706,21048783-21048871,
           21049592-21049647,21049721-21049776,21050163-21050202,
           21050505-21050629,21050715-21050808,21051401-21051480,
           21051598-21051640,21057539-21057630,21057746-21057919
          Length = 347

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 394 PVAASLRIARANLRPNGDSKKFLSE 320
           PV +  R++ ANL  N + K FLSE
Sbjct: 14  PVVSPSRLSAANLLKNNNGKAFLSE 38


>04_04_1513 -
           34107700-34107765,34108475-34108551,34108640-34108688,
           34109144-34109218,34109447-34109554,34109728-34109835,
           34110708-34111256
          Length = 343

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = -3

Query: 183 RIPPPL-VQTGCCTSDLAPR 127
           R+PPPL + +  C SDLAPR
Sbjct: 107 RLPPPLAIASVHCLSDLAPR 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,031,565
Number of Sequences: 37544
Number of extensions: 199463
Number of successful extensions: 414
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)