Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_C04
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p...    28   3.2  
At1g49510.1 68414.m05549 expressed protein                             28   3.2  
At4g17950.1 68417.m02673 DNA-binding family protein contains Pfa...    26   9.7  

>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 477

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 3   GFPRFAQATMST---AMWSLFFIVQILLNVSGHSVLDPDTLKDVFGEQDQKY 149
           G+   A ATM     +MW  F +VQ     S H  L+PD  + VFG   +KY
Sbjct: 191 GYHGNAAATMGATGQSMWK-FNVVQN----SVHHALNPDPYRGVFGSDGEKY 237


>At1g49510.1 68414.m05549 expressed protein
          Length = 240

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 9   PRFAQATMSTAMWSLFFIVQILLNVSGH 92
           P FA   +  A+WS+FF  +   N SG+
Sbjct: 203 PHFANGVLLRALWSMFFWYKKTRNTSGN 230


>At4g17950.1 68417.m02673 DNA-binding family protein contains Pfam
           PF03479: Domain of unknown function (DUF296); contains
           Pfam PF02178: AT hook motif;
          Length = 439

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 249 LSPSSQDQQGLHYPE*QPLLEQRIPPPLVQTGCCTSDLAPRTHLLKYPGLKH 94
           +SP    Q   H+P+ Q  ++Q+    L   G  +S  A + H +++ G+ H
Sbjct: 77  MSPHQPQQHQYHHPQPQQQIDQKTLESLGFDGSPSSVAATQQHSMRF-GIDH 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,998,352
Number of Sequences: 28952
Number of extensions: 163734
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)