Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_C03
(424 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 204 1e-53
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 144 2e-35
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 144 2e-35
At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 142 9e-35
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 93 5e-20
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 52 2e-07
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 52 2e-07
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 48 2e-06
At5g13650.2 68418.m01585 elongation factor family protein contai... 41 4e-04
At5g13650.1 68418.m01584 elongation factor family protein contai... 41 4e-04
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 34 0.035
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 31 0.24
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 31 0.43
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 31 0.43
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 31 0.43
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 30 0.56
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 30 0.74
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 30 0.74
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 0.98
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 0.98
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 29 1.3
At1g16090.1 68414.m01930 wall-associated kinase-related contains... 29 1.3
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 29 1.7
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ... 29 1.7
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 28 2.3
At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein bet... 28 2.3
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 28 3.0
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 28 3.0
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 27 4.0
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 27 4.0
At3g09000.1 68416.m01053 proline-rich family protein 27 4.0
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 27 4.0
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 27 4.0
At5g04590.1 68418.m00458 sulfite reductase / ferredoxin (SIR) id... 27 5.2
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 27 5.2
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 27 6.9
At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein bet... 27 6.9
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 27 6.9
At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)... 27 6.9
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 27 6.9
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 27 6.9
At5g38560.1 68418.m04662 protein kinase family protein contains ... 26 9.1
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 26 9.1
At4g29220.1 68417.m04180 phosphofructokinase family protein simi... 26 9.1
At2g35490.1 68415.m04347 plastid-lipid associated protein PAP, p... 26 9.1
At2g33430.1 68415.m04097 plastid developmental protein DAG, puta... 26 9.1
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 26 9.1
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 26 9.1
At1g33720.1 68414.m04169 cytochrome P450, putative similar to SP... 26 9.1
At1g30050.1 68414.m03674 hypothetical protein 26 9.1
At1g27100.1 68414.m03303 expressed protein contains Pfam profil... 26 9.1
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 204 bits (499), Expect = 1e-53
Identities = 90/140 (64%), Positives = 113/140 (80%)
Frame = +3
Query: 3 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 182
DAIHRGGGQ+IPT RR +YA +TA+PRL+EPVY+ EIQ PE A+GGIY VLN++RGHVF
Sbjct: 697 DAIHRGGGQVIPTARRVIYASQITAKPRLLEPVYMVEIQAPEGALGGIYSVLNQKRGHVF 756
Query: 183 EESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPCEPNSKP 362
EE Q GTP++ +KAYLPV ESFGF++ LR+ T GQAFPQCVFDHW+++ DP EP ++
Sbjct: 757 EEMQRPGTPLYNIKAYLPVVESFGFSSQLRAATSGQAFPQCVFDHWEMMSSDPLEPGTQA 816
Query: 363 YVVVQETRKRKGLKEGLPDL 422
V+V + RKRKGLKE + L
Sbjct: 817 SVLVADIRKRKGLKEAMTPL 836
>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 144 bits (350), Expect = 2e-35
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +3
Query: 3 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 182
+ +HRG GQ+IPT RR Y+ L A PRLMEPVY EIQ P V IY VL+RRRGHV
Sbjct: 813 EPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVT 872
Query: 183 EESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPCE 347
+ GTP ++VKA+LPV ESFGF DLR +T GQAF VFDHW I+PGDP +
Sbjct: 873 SDVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLD 927
>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
to Cryptosporidium parvum elongation factor-2 GB:U21667
GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 144 bits (350), Expect = 2e-35
Identities = 68/115 (59%), Positives = 80/115 (69%)
Frame = +3
Query: 3 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 182
+ +HRG GQ+IPT RR Y+ L A PRLMEPVY EIQ P V IY VL+RRRGHV
Sbjct: 813 EPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVT 872
Query: 183 EESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPCE 347
+ GTP ++VKA+LPV ESFGF DLR +T GQAF VFDHW I+PGDP +
Sbjct: 873 SDVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLD 927
>At5g25230.1 68418.m02991 elongation factor Tu family protein
translation Elongation Factor 2, Schizosaccharomyces
pombe, PIR:T39902
Length = 973
Score = 142 bits (344), Expect = 9e-35
Identities = 67/115 (58%), Positives = 80/115 (69%)
Frame = +3
Query: 3 DAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 182
+ +HRG GQ+IPT RR Y+ L A PRLMEPVY EIQ P V IY VL+RRRG+V
Sbjct: 799 EPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGYVT 858
Query: 183 EESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPCE 347
+ GTP ++VKA+LPV ESFGF DLR +T GQAF VFDHW I+PGDP +
Sbjct: 859 SDVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLD 913
>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 93.5 bits (222), Expect = 5e-20
Identities = 41/106 (38%), Positives = 61/106 (57%)
Frame = +3
Query: 24 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 203
GQ++ + A +L PR++E +Y CE+ +G +Y VL+RRR + +E G
Sbjct: 853 GQVMTAVKDACRAAVLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILKEEMQEG 912
Query: 204 TPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDP 341
+ +F V AY+PV+ESFGF +LR T G A V HW++L DP
Sbjct: 913 SSLFTVHAYVPVSESFGFADELRKGTSGGASALMVLSHWEMLEEDP 958
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 52.0 bits (119), Expect = 2e-07
Identities = 26/76 (34%), Positives = 42/76 (55%)
Frame = +3
Query: 63 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVN 242
C A+P ++EPV L E++ P G + G +N+R+G + Q V+ A +P+N
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQEGDDS--VITANVPLN 706
Query: 243 ESFGFTADLRSNTGGQ 290
FG++ LRS T G+
Sbjct: 707 NMFGYSTSLRSMTQGK 722
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 52.0 bits (119), Expect = 2e-07
Identities = 26/76 (34%), Positives = 42/76 (55%)
Frame = +3
Query: 63 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVN 242
C A+P ++EPV L E++ P G + G +N+R+G + Q V+ A +P+N
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQEGDDS--VITANVPLN 706
Query: 243 ESFGFTADLRSNTGGQ 290
FG++ LRS T G+
Sbjct: 707 NMFGYSTSLRSMTQGK 722
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 48.4 bits (110), Expect = 2e-06
Identities = 26/73 (35%), Positives = 40/73 (54%)
Frame = +3
Query: 75 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFG 254
A PR++EP+ E+ PE +G + G LN RRG + G + VV + +P+ E F
Sbjct: 683 AGPRMLEPIMRVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDSLVPLAEMFQ 741
Query: 255 FTADLRSNTGGQA 293
+ + LR T G+A
Sbjct: 742 YVSTLRGMTKGRA 754
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 40.7 bits (91), Expect = 4e-04
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +3
Query: 84 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGFTA 263
+L+EP + ++ PE +G + +L +RRG +F+ V ++ +P G
Sbjct: 473 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIPTRGLLGLRN 532
Query: 264 DLRSNTGGQAFPQCVFDHWQILPGD 338
+ + + G A VFD + GD
Sbjct: 533 AILTASRGTAILNTVFDSYGPWAGD 557
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 40.7 bits (91), Expect = 4e-04
Identities = 21/85 (24%), Positives = 39/85 (45%)
Frame = +3
Query: 84 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNESFGFTA 263
+L+EP + ++ PE +G + +L +RRG +F+ V ++ +P G
Sbjct: 472 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIPTRGLLGLRN 531
Query: 264 DLRSNTGGQAFPQCVFDHWQILPGD 338
+ + + G A VFD + GD
Sbjct: 532 AILTASRGTAILNTVFDSYGPWAGD 556
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 34.3 bits (75), Expect = 0.035
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Frame = +1
Query: 181 SRSRKSPAHPCSW*RRTCPSTSR--SGSPPTC---APTPEGR--RSRSASSITGRSCPET 339
SR R+SP+ P R P R S SPP +PTP R RS S + RS P
Sbjct: 307 SRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSPPARRHRSPPPA 366
Query: 340 RASPTPSHTLSYRKQERGKA*RKVSP 417
R +PS R+ A R+ SP
Sbjct: 367 RRRRSPSPPARRRRSPSPPARRRRSP 392
Score = 30.3 bits (65), Expect = 0.56
Identities = 25/67 (37%), Positives = 32/67 (47%)
Frame = +2
Query: 215 RGEGVPARQRVVRVHRRPALQHRRAGVPAVRLRSLADPARRPVRAQLQAIRCRTGNKKEE 394
R PAR+R R PA +HR PA + RS + PARR R+ A R R+ +
Sbjct: 321 RSPSPPARRR--RSPSPPARRHRSPTPPARQRRSPSPPARRH-RSPPPARRRRSPSPPAR 377
Query: 395 RLEGRSP 415
R SP
Sbjct: 378 RRRSPSP 384
Score = 27.5 bits (58), Expect = 4.0
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +1
Query: 235 PSTSRSGSPPTC--APTPEGRRSRSASSITGRS-CPETRASPTPSHTLSYRKQERGKA*R 405
P SRS SP PT EGRR A S RS P R +PS R+ A R
Sbjct: 280 PFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARR 339
Query: 406 KVSP 417
SP
Sbjct: 340 HRSP 343
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 271 APTPEGRRSRSASSITGRSCPETRASPTPSHTLS 372
+PTP RRSR +SS + R SP+ S + S
Sbjct: 585 SPTPVNRRSRRSSSASRSPDRRRRRSPSSSRSPS 618
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 31.5 bits (68), Expect = 0.24
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = +1
Query: 235 PSTSRS-GSPPT--CAPTPEGRRSRSASSIT-GRSCPETRASPTP 357
PST+ S GSPPT PTP G S ++ T G S P + +PTP
Sbjct: 459 PSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTP 503
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 235 PSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTP 357
PS S SPP+ P+P + + G S P + +PTP
Sbjct: 450 PSPSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTP 490
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 229 TCPSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTPS 360
T PS S P+ +P+P S+ T P + +SPTPS
Sbjct: 512 TTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTPS 555
Score = 27.1 bits (57), Expect = 5.2
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 229 TCPST-SRSGSPPTC--APTPEGRRSRSASSIT-GRSCPETRASPTP 357
T P+T + GSPP+ PTP G S ++ T G S P + +P+P
Sbjct: 470 TSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPSP 516
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 30.7 bits (66), Expect = 0.43
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 295 NACPPVLERRSAVNPNDSLTGRYAFTTNMGVPATCDSSNT 176
N+ P E + A NP+D L G TT V TC SN+
Sbjct: 3473 NSSLPKTEEKDAENPSDRLDGESDGTTVATVEGTCVESNS 3512
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 30.7 bits (66), Expect = 0.43
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -1
Query: 295 NACPPVLERRSAVNPNDSLTGRYAFTTNMGVPATCDSSNT 176
N+ P E + A NP+D L G TT V TC SN+
Sbjct: 3518 NSSLPKTEEKDAENPSDRLDGESDGTTVATVEGTCVESNS 3557
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 30.7 bits (66), Expect = 0.43
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 262 PTCAPTPEGRRSRSASSITGRSCPETRASPTPS 360
P A P G SRS S + RS P A+P PS
Sbjct: 785 PKLAQAPSGISSRSVSPFSRRSSPPRSATPMPS 817
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 30.3 bits (65), Expect = 0.56
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 93 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFVVKAYLPVNE-SFGFTADL 269
EP + I P VG + + + RRG E + + +F +K LP+ E F +L
Sbjct: 466 EPTVIATIILPSEYVGAVINLCSDRRGQQLEYTFIDAQRVF-LKYQLPLREIVVDFYDEL 524
Query: 270 RSNTGGQA 293
+S T G A
Sbjct: 525 KSITSGYA 532
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 29.9 bits (64), Expect = 0.74
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +1
Query: 181 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTP 357
SR R+SP+ S R + S SRSGS P+ + + RSRS SS + S + S +P
Sbjct: 5 SRGRRSPSVSGSSSRSS--SRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSP 61
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 271 APTPEGRRSRSASSITGRSCPETRASPTPSHTLSYRKQERGKA 399
A GRRS S S + RS +R+ +PS ++S R + R ++
Sbjct: 2 AKPSRGRRSPSVSGSSSRSSSRSRSGSSPSRSIS-RSRSRSRS 43
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 29.9 bits (64), Expect = 0.74
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = +1
Query: 181 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTP 357
SR R+SP+ S R + S SRSGS P+ + + RSRS SS + S + S +P
Sbjct: 5 SRGRRSPSVSGSSSRSS--SRSRSGSSPSRSISRSRSRSRSLSSSSSPSRSVSSGSRSP 61
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 271 APTPEGRRSRSASSITGRSCPETRASPTPSHTLSYRKQERGKA 399
A GRRS S S + RS +R+ +PS ++S R + R ++
Sbjct: 2 AKPSRGRRSPSVSGSSSRSSSRSRSGSSPSRSIS-RSRSRSRS 43
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.5 bits (63), Expect = 0.98
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +1
Query: 181 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSAS 309
SRSR S R STSRS P + + +P RRSRS S
Sbjct: 229 SRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRS 271
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.5 bits (63), Expect = 0.98
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = +1
Query: 181 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSAS 309
SRSR S R STSRS P + + +P RRSRS S
Sbjct: 229 SRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRS 271
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 196 SPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTPSHT 366
SPAH S T S S S SP TP +S S ++ S P+ A+P+ T
Sbjct: 264 SPAHSPSHSPATPKSPSPSSSPAQSPATPSPMTPQSPSPVSSPS-PDQSAAPSDQST 319
>At1g16090.1 68414.m01930 wall-associated kinase-related contains
similarity to wall-associated kinase 2 GI:4826399 from
[Arabidopsis thaliana]; similar to wall-associated
kinase 1 (GI:3549626) [Arabidopsis thaliana]; contains
one transmembrane domain
Length = 317
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 383 CFLYDNVWLGVGLARVSGQDLPVIEDALRE 294
C+L +N W V R SG LPV++ RE
Sbjct: 55 CYLNNNEWYEVICNRTSGNPLPVLKSINRE 84
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 235 PSTSRSGSPP---TCAPTPEGRRSRSASSITGRSCPETRASPTPSHTLSYR 378
PS+S S PP PT +R+R +SS + P +S T + + S R
Sbjct: 16 PSSSSSSPPPPPSASGPTTRSKRARLSSSSSSSLAPTPPSSSTTTRSRSSR 66
>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
protein, putative (SR1) identical to partial sequence of
ethylene-induced calmodulin-binding protein GI:11545505
from [Arabidopsis thaliana]; contains Pfam profiles
PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
motif, and PF00023: Ankyrin repeat
Length = 1032
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 200 GDLRLLEHVPAPSVQHAVDTTDRHLRTLDLAKVHGFHKPGLRGQQT 63
GD EH S + H +T D A V+GFH P L ++
Sbjct: 161 GDALTSEHDGYASCSFNQNDHSNHSQTTDSASVNGFHSPELEDAES 206
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 256 SPPTCAPTPE-GRRSRSASSITGRSCPETRASPTPS 360
S PTC PT + ++R+AS + CP T SP PS
Sbjct: 402 SSPTCPPTEQRSSKTRAASVSSDIFCPVT-CSPFPS 436
>At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 608
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -1
Query: 283 PVLERRSAVNPNDSLTGRYAFTTNMGVPATCDSSNTCPRRLFSTP*IPPTATSGHW 116
P++ AV+ N+++ G F N+G+ AT D+ RR+ + + A+ HW
Sbjct: 94 PIIYGTDAVHGNNNVYGATVFPHNIGLGATRDAD--LVRRIGAATALEVRASGVHW 147
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 235 PSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASP---TPSHTLSYRKQER 390
P+ + P P+ RRSRS S RS +R+ P +P + S R++ R
Sbjct: 96 PNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSR 150
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +1
Query: 235 PSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASP---TPSHTLSYRKQER 390
P+ + P P+ RRSRS S RS +R+ P +P + S R++ R
Sbjct: 96 PNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSR 150
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 202 AHPCSW*RRTCPSTSRSGSPPTCA 273
AHP W ++ CPS R G+P C+
Sbjct: 260 AHPF-WMQKYCPSHERDGTPRCCS 282
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 202 AHPCSW*RRTCPSTSRSGSPPTCA 273
AHP W ++ CPS R G+P C+
Sbjct: 64 AHPF-WMQKYCPSHERDGTPRCCS 86
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 181 SRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTPS 360
SRS PA P R T P+TS S T A S +++T + A+P +
Sbjct: 153 SRSTSRPATPTR--RSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTAAPRTT 210
Query: 361 HTLS 372
T S
Sbjct: 211 TTSS 214
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.5 bits (58), Expect = 4.0
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +1
Query: 187 SRKSPAHPCSW*RRTCPST-SRSGSP--PTCAPTPEGRRSRSASSITGRSCPE---TRAS 348
S +P+HP PST S + +P P+ PTP S + S P T +
Sbjct: 66 SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125
Query: 349 PTPSH 363
PTPSH
Sbjct: 126 PTPSH 130
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.5 bits (58), Expect = 4.0
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +1
Query: 187 SRKSPAHPCSW*RRTCPST-SRSGSP--PTCAPTPEGRRSRSASSITGRSCPE---TRAS 348
S +P+HP PST S + +P P+ PTP S + S P T +
Sbjct: 66 SPSTPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSH 125
Query: 349 PTPSH 363
PTPSH
Sbjct: 126 PTPSH 130
>At5g04590.1 68418.m00458 sulfite reductase / ferredoxin (SIR)
identical to sulfite reductase [Arabidopsis thaliana]
GI:804953, GI:2584721
Length = 642
Score = 27.1 bits (57), Expect = 5.2
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 277 LERRSAVNPNDSL-TGRYAFTTNMGVPATCDSSNTCPRRLFSTP*IPPTAT 128
L R A+ + S+ GRY + VP + SS++ P + STP P TAT
Sbjct: 23 LGRLDALRSSHSVFLGRYG-RGGVPVPPSASSSSSSPIQAVSTPAKPETAT 72
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 27.1 bits (57), Expect = 5.2
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +1
Query: 172 GTCSRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRS 327
GT R KS + RR+ RS SP +P P RRS S GRS
Sbjct: 119 GTGRRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRS 170
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 235 PSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTPSHTLSYRKQE 387
P RS +PPT AP P RS + P R + P H+ +Y +Q+
Sbjct: 342 PHAPRSHAPPTYAPRPHAPRSYAP---INSHLP--RPNIPPYHSYTYSEQQ 387
>At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 581
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -1
Query: 283 PVLERRSAVNPNDSLTGRYAFTTNMGVPATCDSSNTCPRRLFSTP*IPPTATSGHW 116
P++ AV+ N+++ G F N+G+ AT D+ +R+ + + A+ HW
Sbjct: 67 PIIYGTDAVHGNNNVYGATVFPHNIGLGATRDAD--LVKRIGAATALEIRASGVHW 120
>At3g19050.1 68416.m02420 kinesin motor protein-related contains
Pfam profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 175 TCSRSRKSPAHPCSW*RRTCPSTSRSGSPPTCAP--TPEGRRSRSASS 312
T + S K+P H C PS R+ +P P TP+ RS +A S
Sbjct: 34 TSNDSLKNPKHECGSKIDRTPSKPRAKNPDPALPLRTPDKYRSAAAFS 81
>At2g46830.2 68415.m05844 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 526
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 250 SGSPPTCAPTPEGRRSRSASSITGRSC--PETRASPTPSHTLSYRKQERGKA 399
+G P CAP G + S G SC T+AS ++ R+QE +A
Sbjct: 243 NGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQEHSEA 294
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 250 SGSPPTCAPTPEGRRSRSASSITGRSC--PETRASPTPSHTLSYRKQERGKA 399
+G P CAP G + S G SC T+AS ++ R+QE +A
Sbjct: 325 NGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQEHSEA 376
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 26.6 bits (56), Expect = 6.9
Identities = 16/66 (24%), Positives = 23/66 (34%)
Frame = +3
Query: 33 IPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPM 212
I + L + LT P L P LC+ +GG+ V+ + P
Sbjct: 295 IDVYKEVLASIHLTVIPHLSNPTMLCDFLTKSYDIGGVVSVMALSSLFILMTQHGLEYPF 354
Query: 213 FVVKAY 230
F K Y
Sbjct: 355 FYEKLY 360
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/54 (31%), Positives = 19/54 (35%)
Frame = +1
Query: 196 SPAHPCSW*RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTP 357
SP+ P T P S SPP P+P G P T SP P
Sbjct: 122 SPSPPAP--TTTNPPPKPSPSPPGETPSPPGETPSPPKPSPSTPTPTTTTSPPP 173
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 26.2 bits (55), Expect = 9.1
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 175 TCSRSRKSPAHPCSW*RRTCPS-TSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRAS- 348
T + SPA P R S TS + SP T TP R S SS +S E R+
Sbjct: 16 TTPTGKSSPATPRIAKRTVNKSETSNNNSPSTT--TPHSRLSLDRSSPNSKSSVERRSPK 73
Query: 349 -PTP 357
PTP
Sbjct: 74 LPTP 77
>At4g29220.1 68417.m04180 phosphofructokinase family protein similar
to phosphofructokinase [Amycolatopsis methanolica]
GI:17432243; contains Pfam profile PF00365:
Phosphofructokinase
Length = 473
Score = 26.2 bits (55), Expect = 9.1
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 9 IHRGGGQIIPTTR--RCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVF 182
IHR GG I+ T+R + + Q R + VY+ + I+ + +R+ V
Sbjct: 153 IHRSGGTILGTSRGGHNTTKIVDSIQDRGINQVYIIGGDGSQKGAAAIFEEIRKRKLKV- 211
Query: 183 EESQVAGTPMFVVKAYLPVNESFGF 257
VAG P + ++ SFGF
Sbjct: 212 ---AVAGIPKTIDNDIPIIDRSFGF 233
>At2g35490.1 68415.m04347 plastid-lipid associated protein PAP,
putative similar to plastid-lipid associated protein
PAP3 [Brassica rapa] GI:14248552; contains Pfam profile
PF04755: PAP_fibrillin
Length = 376
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 306 VFDHWQILPGDPCEPNSKP-YVVVQETRKRKGLKEGLPDL 422
V D W PGD EP+S+P V V G K G P+L
Sbjct: 71 VTDEWGEKPGDANEPDSQPDNVTVNVITDEWGEKSG-PEL 109
>At2g33430.1 68415.m04097 plastid developmental protein DAG,
putative similar to DAG protein, chloroplast precursor
[Garden snapdragon] SWISS-PROT:Q38732
Length = 219
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 228 YLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDP 341
Y P+N F+ D FP C ++HW I+ P
Sbjct: 58 YSPLNSGSNFS-DRPPTEMAPLFPGCDYEHWLIVMDKP 94
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 241 TSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTPSHTLS 372
+S S PT PTP S A +++ P +PT S S
Sbjct: 692 SSTPSSEPTQVPTPSSSESYQAPNLSPVQAPTPVQAPTTSSETS 735
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 26.2 bits (55), Expect = 9.1
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +1
Query: 223 RRTCPSTSRSGSPPTCAPTPEGRRSRSASSITGRSCPETRASPTPSHTLSYRKQERGKA 399
R T P+ S S +PP APT S+ + P T SP+ + + E G A
Sbjct: 44 RATAPAPSPSANPPPSAPTTAPPVSQPPTE--SPPAPPTSTSPSGAPGTNVPSGEAGPA 100
>At1g33720.1 68414.m04169 cytochrome P450, putative similar to
SP|O64636 Cytochrome P450 76C1 (EC 1.14.-.-)
{Arabidopsis thaliana}; contains Pfam profile PF00067:
Cytochrome P450
Length = 511
Score = 26.2 bits (55), Expect = 9.1
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 418 SGRPSFKPFLFLVSCTTTYGLELGSHGSPGRICQ*SKTHCGNACPPVLERRSAV--NPND 245
SG+P F F F++SC + S SP CQ SK+ G P++ V NP+
Sbjct: 5 SGQPLFLIFCFILSCLLFF-TTARSRRSP---CQLSKSPPGPPRLPIIGNIHLVGKNPHH 60
Query: 244 SLT 236
S T
Sbjct: 61 SFT 63
>At1g30050.1 68414.m03674 hypothetical protein
Length = 389
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 144 YHRPPPPDTGSRKG 103
YH+PP PD G KG
Sbjct: 20 YHQPPDPDHGDLKG 33
>At1g27100.1 68414.m03303 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 519
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 362 WLGVGLARVSGQDLPVIEDALRERLPSGVGAQVGGEP 252
WL + + G DL + D + S VG++ G EP
Sbjct: 141 WLIWDVITIDGSDLENMSDGDESSVSSPVGSEFGSEP 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,819,082
Number of Sequences: 28952
Number of extensions: 250287
Number of successful extensions: 1004
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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