Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B24
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   2.0  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    26   3.5  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    26   3.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.5  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   4.7  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   6.2  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   6.2  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   6.2  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   8.2  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   8.2  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 63  MSPLVQWASVSRTLESKTLRRIAVNTVNSCSVLTRHSLRT 182
           +SP V + S  R    ++LR+I  +  +S    T HS  T
Sbjct: 524 VSPAVVFTSSPRIFSPQSLRKIGFDPTHSADASTTHSTAT 563


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 206 ETLFGSEDECT-TQGLDDLAQRCAQYKKDGCHFAKW 310
           E + GSE   + T+   D+A+  A + K+G +F+ W
Sbjct: 389 EEILGSESHSSITEKTRDIAKNVATWLKNGENFSSW 424


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 41  GKGILAADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSDPA 169
           GKG   ADE       +  +I  +  EEN  K R L+   +PA
Sbjct: 18  GKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPA 60


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 182  ISGVILFHETLFGSEDECTTQGLDDLAQRCAQYKKDGCHFAKWRCV 319
            IS   L  E+LFGS +  T +  D +  +  +  +D C++ ++  V
Sbjct: 2203 ISPKALTKESLFGSMNMDTREWTDGVFTKLLRKTRDSCYYKRYMFV 2248


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 372 LAFSKMAWYDGVLRPIFNTQ 313
           + F+K+ WY   L  +FNT+
Sbjct: 33  ITFAKLRWYGKTLLEVFNTE 52


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 59  ADESTGTMGKRLQDIGVENTEENRRKYRQLLFSSDPALSENISGVIL 199
           AD+ T   G  +  + + N  EN+   R    SSDPA  +N    +L
Sbjct: 529 ADKMTDMRGLCVNPLLLGNFVENKDLPRMASISSDPATLKNAIAFVL 575


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 365 NANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVT 484
           N+N LA+   + + ++++P+  P+  PD   +++   + T
Sbjct: 325 NSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEET 364


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 304 QVALRIEDRPQHSIVPSHLGECQCVG 381
           Q+    +D    SIVP+H  E  C+G
Sbjct: 157 QILFLFKDHMNTSIVPAHDSEISCLG 182


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 375 CWLATPPSARVSVSCQ*LS 431
           C + TPP A+VSVS + +S
Sbjct: 528 CLVVTPPEAKVSVSFEEIS 546


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 404 SGRWRRSEPTHWH 366
           SG W  S P HWH
Sbjct: 380 SGSWWISSPDHWH 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,113
Number of Sequences: 5004
Number of extensions: 47233
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)