Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B23
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   149   1e-37
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   149   1e-37
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   0.40 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   1.6  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   2.1  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   3.7  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   3.7  
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    25   4.9  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    24   6.5  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    24   8.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    24   8.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   8.6  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    24   8.6  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    24   8.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    24   8.6  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  149 bits (362), Expect = 1e-37
 Identities = 68/88 (77%), Positives = 77/88 (87%)
 Frame = +3

Query: 93  VPDPKIGISDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQF 272
           VPD KI I DLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  GKD F
Sbjct: 26  VPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSF 85

Query: 273 HIRMRLHPFHVIRIIKMLSCAGADRLQT 356
           H+R+R HPFHV+RI KMLSCAGADRLQT
Sbjct: 86  HLRVRAHPFHVVRINKMLSCAGADRLQT 113



 Score = 35.9 bits (79), Expect = 0.002
 Identities = 21/44 (47%), Positives = 25/44 (56%)
 Frame = +2

Query: 8   MGRRPARCYRYCTN*TRYSLKSFGFGRGCA*PKDRYFGLGQKES 139
           M RRPARCYRYC N  +   KS  + R     K R F LG+K +
Sbjct: 1   MARRPARCYRYCKN--KPYPKS-RYNRAVPDSKIRIFDLGRKRA 41


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  149 bits (362), Expect = 1e-37
 Identities = 68/88 (77%), Positives = 77/88 (87%)
 Frame = +3

Query: 93  VPDPKIGISDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQF 272
           VPD KI I DLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK  GKD F
Sbjct: 26  VPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSF 85

Query: 273 HIRMRLHPFHVIRIIKMLSCAGADRLQT 356
           H+R+R HPFHV+RI KMLSCAGADRLQT
Sbjct: 86  HLRVRAHPFHVVRINKMLSCAGADRLQT 113



 Score = 35.9 bits (79), Expect = 0.002
 Identities = 21/44 (47%), Positives = 25/44 (56%)
 Frame = +2

Query: 8   MGRRPARCYRYCTN*TRYSLKSFGFGRGCA*PKDRYFGLGQKES 139
           M RRPARCYRYC N  +   KS  + R     K R F LG+K +
Sbjct: 1   MARRPARCYRYCKN--KPYPKS-RYNRAVPDSKIRIFDLGRKRA 41


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 28.3 bits (60), Expect = 0.40
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 105 KIGISDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 221
           KI   +  +KRA +D   LC+  +S + E ++  +LE+G
Sbjct: 56  KISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
 Frame = +3

Query: 117  SDLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 263
            +++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1032 TEIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 37  ILYELNPVFLKILRVWPGLCLTQRS 111
           +L+ ++P+   +LR  PG CLT+++
Sbjct: 88  VLHVISPINWDVLRRKPGCCLTKKN 112


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 213 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSPKYRS 106
           P P +S+ R  Q+LSA +  S+P    + PSP   S
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNP----YMPSPSLLS 504


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 118 RTWAKRERQWMTSH 159
           + W +RERQW+  H
Sbjct: 89  KIWLRRERQWLQRH 102


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 24  RDVIDIVRIKPGIP*NPSGLAGVVPDPKIGISDLGKKRATVD 149
           R  +  VRI PG+    +    V PDP+  +S L +++   D
Sbjct: 243 RSTVHRVRIDPGVKTRQTIAYFVTPDPETPLSPLFEEKTGKD 284


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 236 QVPRKELR*RSVPHPDEITPLP 301
           ++ ++ LR  S P PD + PLP
Sbjct: 138 ELEKRYLRLTSAPDPDTVRPLP 159


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 300 GRGVISSGCGTDLYR 256
           G GV + GC  DLY+
Sbjct: 388 GEGVFADGCNFDLYK 402


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 189 EQLSSEALEAGRICCN 236
           E LSS+ +   RICCN
Sbjct: 262 ESLSSQQMSCLRICCN 277


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 153 SHPLSLSFCPSPKYRSLGQAQPRPNPKDFKEYRV 52
           SHP+S +   SP    +  A P+  PK    ++V
Sbjct: 208 SHPMSAASSASPAEIGMEHAGPKMIPKASSSFKV 241


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 61  FLKILRVWPGLCLTQRS 111
           +L  L  WP LC+ Q S
Sbjct: 32  YLSYLNKWPSLCVVQES 48


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -2

Query: 159 VGSHPLSLSFCPSPKYRSLGQAQPRPNPKDFKEYR 55
           +GS     S   SP  RS+G   P P  K   +++
Sbjct: 10  IGSQAPERSDSESPSSRSIGSGTPAPVRKGLSKFK 44


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 100  SGTTPAKPEGF*GI 59
            SGT PA P GF GI
Sbjct: 1029 SGTNPAAPAGFGGI 1042


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,998
Number of Sequences: 5004
Number of extensions: 35260
Number of successful extensions: 125
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)