Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B23
(370 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22071| Best HMM Match : Keratin_B2 (HMM E-Value=3.3) 29 0.89
SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) 27 3.6
SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5) 27 4.8
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 27 4.8
SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058) 27 4.8
SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09) 27 6.3
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03) 27 6.3
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) 27 6.3
SB_47163| Best HMM Match : SH2 (HMM E-Value=6.4) 27 6.3
SB_10609| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_22071| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)
Length = 260
Score = 29.5 bits (63), Expect = 0.89
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = -3
Query: 146 HCRSLFAQVRNTD--LWV---RHNPGQTRRILRNTGFNSYNIDN 30
HC + Q NTD +W+ + PGQ R++LRN+ +YN N
Sbjct: 38 HCPTSEQQHCNTDNQVWLLDDQPKPGQIRKVLRNSILANYNCYN 81
>SB_15292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 983
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 178 DTKCTHSGKSSTVALFLPKSEIPIFGSGTTPAKPEGF*GIPGLIR 44
D+K + G+ + VA + S G G+ P GF +P L+R
Sbjct: 589 DSKISDKGREARVAECVSASASHRCGQGSNPGSNWGFFRVPALVR 633
>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
Length = 992
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 37 ILYELNPVFLKILRVWPGLCLTQRSVFRTWAKRERQWMTSHYAC 168
I+ E V K+LRV G T+ F+ WA+ +W S Y C
Sbjct: 747 IIDECCKVQTKVLRVILGYLATRP--FQEWAQGNIRWFESDYRC 788
>SB_32977| Best HMM Match : Gp-FAR-1 (HMM E-Value=2.5)
Length = 402
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 326 QHFNDADDMEGV*SHPDVELIFTAVLYEVLVATDTACFQRL 204
+++ND + H DV+ IF Y L+A + FQ++
Sbjct: 130 ENYNDRRESIHTAVHSDVDKIFKGKTYSQLIALEKQIFQKI 170
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 210 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRIIKMLS 329
L I C Y KN +D +RM +HP H IRI ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_22048| Best HMM Match : RHS_repeat (HMM E-Value=0.00058)
Length = 820
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -2
Query: 225 YGLLPAPQNSAARTHQTLSARIV--GSHPLSLSFCPSPKYRSLGQAQPRPNPKD 70
Y + P P ART ++ A+ ++P +LS P P Y G QPR P +
Sbjct: 61 YIIAPRP---CARTTSSIGAKNKENNNNPCALSRYPQPMYYLSGNPQPRYYPSE 111
>SB_52389| Best HMM Match : NACHT (HMM E-Value=2.1e-09)
Length = 818
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 156 GSHPLSLSFCPSPKYRSLGQAQPRPNPKDFKEYR 55
GS ++S P P++ SLGQ++ + DF E+R
Sbjct: 653 GSEGAAMSINPMPEFTSLGQSRDLVD-DDFDEFR 685
>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
Length = 1397
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 144 VDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKD-QFH 275
+D P C VS YE + + R C K L ++C D +FH
Sbjct: 1061 LDPTPECTERVSKTYESGHTLSTATARQQCLKELKESCNDDLEFH 1105
>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
Length = 1037
Score = 26.6 bits (56), Expect = 6.3
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -2
Query: 249 LRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSPKYRSLGQAQPRPNPK 73
LRG N + L + R QT S R L F P R+L + Q +P+ K
Sbjct: 224 LRGRLLNNFDGLSSNAVYVKREWQTTSYREQAILQKRLGFTPIDSQRNLSEGQKQPDTK 282
>SB_47163| Best HMM Match : SH2 (HMM E-Value=6.4)
Length = 172
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 262 KISSTSG*DYTPSMSSASLKCCRALELIGSRL 357
K+ +G D T S+ + L+C ++L+G RL
Sbjct: 18 KLRKLAGKDLTVSIENGQLECVNEVQLLGIRL 49
>SB_10609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 109 SVFRTWAKRERQWMTSHYACT*CLMSTSS*VLRRWKQAV 225
++ RTW T HY T L S + ++WK AV
Sbjct: 35 TMIRTWVIAATTQCTYHYTITERLNSDKKKMTKKWKLAV 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,280
Number of Sequences: 59808
Number of extensions: 292228
Number of successful extensions: 1007
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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