Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_B23
(370 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 142 7e-35
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 142 7e-35
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 142 9e-35
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 30 0.55
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 29 0.73
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 29 0.73
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 29 0.73
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 1.7
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 2.2
At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative ... 27 2.9
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 27 2.9
At1g40080.1 68414.m04737 hypothetical protein member of hypothet... 27 2.9
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha... 26 6.8
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo... 26 6.8
At4g21120.1 68417.m03054 amino acid permease family protein simi... 26 6.8
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 26 6.8
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 26 6.8
At3g26150.1 68416.m03262 cytochrome P450 71B16, putative (CYP71B... 26 6.8
At2g22560.1 68415.m02674 kinase interacting protein-related simi... 26 6.8
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila... 26 9.0
At4g20240.1 68417.m02957 cytochrome P450, putative similar to |C... 26 9.0
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 26 9.0
At4g01740.1 68417.m00226 DC1 domain-containing protein similar t... 26 9.0
At2g31660.1 68415.m03865 importin beta-2 subunit family protein ... 26 9.0
At2g25620.1 68415.m03069 protein phosphatase 2C, putative / PP2C... 26 9.0
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha... 26 9.0
At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containi... 26 9.0
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 142 bits (344), Expect = 7e-35
Identities = 65/88 (73%), Positives = 74/88 (84%)
Frame = +3
Query: 93 VPDPKIGISDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQF 272
VPDPKI I D+G KR VD+FP CVHLVS E E +SSEALEA RI CNKY+VK+ GKD F
Sbjct: 26 VPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAF 85
Query: 273 HIRMRLHPFHVIRIIKMLSCAGADRLQT 356
H+R+R+HPFHV+RI KMLSCAGADRLQT
Sbjct: 86 HLRIRVHPFHVLRINKMLSCAGADRLQT 113
Score = 29.9 bits (64), Expect = 0.55
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +2
Query: 8 MGRRPARCYRYCTN*TRYSLKSFGFGRGCA*PKDRYFGLGQK 133
MGRRPARCYR + KS + RG PK R + +G K
Sbjct: 1 MGRRPARCYRQIKG--KPYPKS-RYCRGVPDPKIRIYDVGMK 39
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 142 bits (344), Expect = 7e-35
Identities = 65/88 (73%), Positives = 74/88 (84%)
Frame = +3
Query: 93 VPDPKIGISDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQF 272
VPDPKI I D+G KR VD+FP CVHLVS E E +SSEALEA RI CNKY+VK+ GKD F
Sbjct: 26 VPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAF 85
Query: 273 HIRMRLHPFHVIRIIKMLSCAGADRLQT 356
H+R+R+HPFHV+RI KMLSCAGADRLQT
Sbjct: 86 HLRIRVHPFHVLRINKMLSCAGADRLQT 113
Score = 29.9 bits (64), Expect = 0.55
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +2
Query: 8 MGRRPARCYRYCTN*TRYSLKSFGFGRGCA*PKDRYFGLGQK 133
MGRRPARCYR + KS + RG PK R + +G K
Sbjct: 1 MGRRPARCYRQIKG--KPYPKS-RYCRGVPDPKIRIYDVGMK 39
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 142 bits (343), Expect = 9e-35
Identities = 65/88 (73%), Positives = 74/88 (84%)
Frame = +3
Query: 93 VPDPKIGISDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQF 272
VPDPKI I D+G KR VD+FP CVHLVS E E +SSEALEA RI CNKY+VK+ GKD F
Sbjct: 26 VPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAF 85
Query: 273 HIRMRLHPFHVIRIIKMLSCAGADRLQT 356
H+R+R+HPFHV+RI KMLSCAGADRLQT
Sbjct: 86 HLRIRVHPFHVLRINKMLSCAGADRLQT 113
Score = 29.9 bits (64), Expect = 0.55
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +2
Query: 8 MGRRPARCYRYCTN*TRYSLKSFGFGRGCA*PKDRYFGLGQK 133
MGRRPARCYR + KS + RG PK R + +G K
Sbjct: 1 MGRRPARCYRQIKG--KPYPKS-RYCRGVPDPKIRIYDVGMK 39
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 29.9 bits (64), Expect = 0.55
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 129 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 302
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
Query: 303 VIRIIKMLS 329
+ I M S
Sbjct: 309 TRQGINMTS 317
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.5 bits (63), Expect = 0.73
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 291 VISSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 148
+I GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 29.5 bits (63), Expect = 0.73
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 291 VISSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 148
+I GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.5 bits (63), Expect = 0.73
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 291 VISSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 148
+I GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 177 SDEYEQLSSEALEAGRICCNKYLV 248
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 225 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 314
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g46660.1 68418.m05749 CHP-rich zinc finger protein, putative
contains similarity to CHP-rich zinc finger protein
Length = 305
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 231 CNKYLVKNCGKDQFHIRMRLHPFHVIRIIKML 326
C K K C + I+ HPFH +R+ L
Sbjct: 143 CQKNFHKECVQSPLEIKHPSHPFHSLRLYSYL 174
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 201 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRIIKMLSC 332
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
>At1g40080.1 68414.m04737 hypothetical protein member of
hypothetical protein common family
Length = 154
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 158 WEVIHCRSLFAQVRNTDLWVRHNPGQTRRILRNT 57
W V H + +F + N + H P Q R++R T
Sbjct: 105 WNVTHDKPVFIDMNNEKRCIMHPPFQPGRMVRRT 138
>At4g36080.1 68417.m05136 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF00454: Phosphatidylinositol 3-
and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
Length = 3839
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 269 LIFTAVLYEVLVATDTACFQRLRTQLLVLIRH*VH 165
LI T + VLV T ACF+ LR L+ VH
Sbjct: 321 LIDTLLEERVLVGTGRACFESLRPLAYSLLAEIVH 355
>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985]
Length = 951
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 198 SSEALEAGRICCNKYLVKNCGKDQFHIR 281
S E G CC Y ++C D H R
Sbjct: 911 SRERCHHGSNCCRSYAKESCSHDHHHTR 938
>At4g21120.1 68417.m03054 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 594
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 147 DDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQF-HIRMRLHPFHVIRII 317
+DF + VH + ++Y L A+ I C +V G +F +I +H ++ +I
Sbjct: 187 EDFRIIVHKLGEDYSHLDPIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVILFVI 244
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +3
Query: 132 KRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 239
K A DF + V V Y LSSEALE CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 189 EQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 314
E +S + A C NK+ K C + I+ HPFH +R+
Sbjct: 130 ESKTSRSYYACLECGNKFH-KQCVESPLEIKHPSHPFHSLRL 170
>At3g26150.1 68416.m03262 cytochrome P450 71B16, putative (CYP71B16)
identical to cytochrome P450 71B16 (SP:Q9LTM7)
[Arabidopsis thaliana]; similar to cytochrome P450
GB:O65784 [Arabidopsis thaliana]
Length = 502
Score = 26.2 bits (55), Expect = 6.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 316 LKCCRALELIGSRLGMRG 369
LKCC +L+GSRL RG
Sbjct: 92 LKCCTRPKLVGSRLISRG 109
>At2g22560.1 68415.m02674 kinase interacting protein-related similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]; weak similarity to Myosin II heavy chain,
non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
Length = 891
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -3
Query: 353 LEPISSSARQHFNDA--DDMEGV*SHPDV-ELIFTAVLYEVLVATDTACFQRLRTQ 195
LE + R+HF + G V EL+ + E V++ TA QRLR +
Sbjct: 273 LESVKEKIREHFESGANSSLNGTDMAEKVDELVNKVISLESAVSSQTALIQRLRNE 328
>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
Length = 1280
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -2
Query: 216 LPAPQNSAARTHQTLSARIVGSHPLSLSFCPSP 118
+P P++S + ++ SA++ +HP+ P+P
Sbjct: 391 VPKPKHSGSGNRKSSSAKVAKNHPVEEPKSPAP 423
>At4g20240.1 68417.m02957 cytochrome P450, putative similar to
|C71R_ARATH Cytochrome P450 71A27 (SP:O65438)
[Arabidopsis thaliana]
Length = 865
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 189 RTHQTLSARIVGSHPLSLSFCPSPKY 112
R+ ++LS R+ +H SL CP P++
Sbjct: 507 RSFRSLSLRLWSAHAPSLRSCPYPRF 532
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 200 F*GAGSRPYLLQQVPRKELR*RSVPHPD 283
F GAGSR +++++ R+E VP PD
Sbjct: 237 FQGAGSRLEMMKEISRREKLKGIVPDPD 264
>At4g01740.1 68417.m00226 DC1 domain-containing protein similar to
T15B16.6 similar to A. thaliana CHP-rich hypothetical
proteins encoded by T10M13, GenBank accession number
AF001308
Length = 652
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 204 EALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRII 317
E++ G C C+ ++ K CG+ +I HP H ++++
Sbjct: 32 ESICDGYYCKICDIFVHKKCGESSEYIEHPSHPNHTLQLL 71
>At2g31660.1 68415.m03865 importin beta-2 subunit family protein
similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
GI:7542336; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1040
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 155 EVIHCRSLFAQVRNTDLWVRHNPGQTRRILRNTGFNSYNID 33
E + +SL QV L+ +NPG T +L NTG S D
Sbjct: 784 ETSYVKSLLIQVVANMLY--YNPGLTLGVLHNTGLASKVFD 822
>At2g25620.1 68415.m03069 protein phosphatase 2C, putative / PP2C,
putative
Length = 392
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 93 VPDPKIGI-SDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 209
VP + G SD+G R++++D LCV D + L+SEA
Sbjct: 85 VPATRSGAWSDIGS-RSSMEDAYLCVDNFMDSFGLLNSEA 123
>At2g17930.1 68415.m02076 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
contains Pfam profiles PF02259 FAT domain, PF00454
Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
domain
Length = 3795
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 269 LIFTAVLYEVLVATDTACFQRLRTQLLVLIRH*VH 165
LI T + VLV T ACF+ LR L+ VH
Sbjct: 279 LIDTLLDERVLVGTGRACFESLRPLAYSLLAEIVH 313
>At1g09900.1 68414.m01114 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 598
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 186 YEQLSSEALEAGRICCNKYLVKNCGKDQ 269
YE ++ EALE CNK L+K +Q
Sbjct: 566 YEGMAKEALELLNELCNKGLMKKSSAEQ 593
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,211,621
Number of Sequences: 28952
Number of extensions: 194954
Number of successful extensions: 606
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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