Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B22
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)              29   3.7  
SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             28   4.9  
SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)                    28   6.5  
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          27   8.6  
SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_7722| Best HMM Match : TFR_dimer (HMM E-Value=2.6e-10)
          Length = 688

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 278 DLDNGISGNIGLNVDGN 228
           ++D G+SGN  LNVDG+
Sbjct: 397 NIDTGVSGNFSLNVDGS 413


>SB_49488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +3

Query: 120 QFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYN 299
           + D  +SV +  + +  S   + +++  ++  + +   I V   + +   + I     Y 
Sbjct: 273 ELDTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYV 332

Query: 300 DXGFPITL-EENWHKFYELDWFTHKITPGQNKIVRNSNE 413
             G  + L   +W + ++L+W + K+  G+N  + +  E
Sbjct: 333 VDGPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 371



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/99 (17%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
 Frame = +3

Query: 120  QFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYN 299
            + D  +SV +  + +  S   + +++  ++  + +   I V   + +   + I     Y 
Sbjct: 756  ELDTGSSVSIIPRNVYESTCKHLELKPAKVKLRTYGSEIIVPMGVVSARTLVITTNAMYV 815

Query: 300  DXGFPITL-EENWHKFYELDWFTHKITPGQNKIVRNSNE 413
              G  + L   +W + ++L+W + K+  G+N  + +  E
Sbjct: 816  VDGPRVALFGRSWLRLFKLEWPSIKLVQGKNTALSDLTE 854


>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 568 NWNGYPPSVPLGNINLFGMHSKPSDIYNGTFPSS--NNFMRSVNGKE 434
           N+ G+   VP G++ L+G H+     +   FP S  N+F+  V G+E
Sbjct: 450 NYAGFTEKVPGGSMALWGRHNLNLKQFMTMFPHSPDNSFLGFVVGEE 496


>SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 327 ENWHKFYELDWFTHKITPGQNKIVRN 404
           + WHK YELD F  K +   N I+RN
Sbjct: 66  KEWHK-YELDKFMEKTSSYHNTILRN 90


>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
          Length = 474

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 51  LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 143
           LH  G K++D VVE +  F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 1   VTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 141
           +TLTHS++T   +   N   S L    L+  N +HS LT + L  LT+
Sbjct: 10  LTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57


>SB_23914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 587

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = -3

Query: 278 DLDNGISGNIGLNVDGNT--ERLVVES 204
           ++D G+ GN  LN+DG+   E+L+VE+
Sbjct: 340 NIDVGVGGNFTLNMDGSALIEKLLVET 366


>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1231

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 27/104 (25%), Positives = 40/104 (38%)
 Frame = +3

Query: 6   INAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHN 185
           +  F+  L PYP  ++HF       VV  +       +  D TNS F    ++    P +
Sbjct: 623 LTEFQTNLVPYP--RIHFPMASYAPVVSAEKAYHEQLTVADITNSCFEPANQMVKCDPRH 680

Query: 186 FKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDXGFPI 317
            K     L ++   V  DV S IAT    K      +   GF +
Sbjct: 681 GKYMACCLLYRGDVVPKDVNSAIATIKTKKTIQFVDWCPTGFKV 724


>SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 288 PKYNDXGFPITLEENWHKFYELDWFTHKITPGQNKIVR-NSNEFSLFKEDSLPXTDLMKL 464
           PK      P  + E+  KFYE + +  +I PG+ + V  N N   + ++  L   +L +L
Sbjct: 160 PKKGGRALPSDVLEHIVKFYESEEYP-RICPGKKEFVSVNENNVKVHRQKQLLLVNLHEL 218

Query: 465 LDEGK 479
             E K
Sbjct: 219 YVEYK 223


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 320 CDGESXIVVLRSQEDLDNGISGNIG-LNVDGNTERLVVESW 201
           C  ES  ++LR+ ED+ +   GN+G LN+   T+  V  SW
Sbjct: 815 CGAESNELILRTFEDVPSVAPGNVGTLNLTSMTDLRV--SW 853


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,222,306
Number of Sequences: 59808
Number of extensions: 340225
Number of successful extensions: 918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)