Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B22
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    31   0.46 
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell death-re...    30   1.4  
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass...    29   2.4  
AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical...    29   3.2  
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z48585-10|CAJ43439.1|  338|Caenorhabditis elegans Hypothetical p...    28   5.7  
Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC087081-18|AAK66030.1|  124|Caenorhabditis elegans Hypothetical...    28   5.7  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    27   7.5  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   7.5  
U53146-1|AAA96111.1|  348|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC024696-1|AAK84516.1|  348|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
 Frame = +3

Query: 216 KPFSVTIDVKSDIATDAVIKIFLGPKYNDXGF---PITLEENWHKFYELDWFTHKITPGQ 386
           K F V I   S+I +  ++++F  P  ++ G    PI  +   H FY L++F  K+T   
Sbjct: 143 KTFGVKI-ASSEIQSSHLLELF--PSLSNLGVYNVPINTQILTHNFYWLEFFKTKVTL-D 198

Query: 387 NKIVRNSNEFSLFKEDSLPXTDL 455
           + +V N ++FS+ + ++LP  +L
Sbjct: 199 DILVSNCSKFSI-EYNNLPDKEL 220


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 456 MKLLDEGKVPLYMSEGFECMPNRLMLPRGTEGGYP 560
           M  +  G  P  M+ G   MP+ +M PRG  G YP
Sbjct: 126 MPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYP 160


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 456 MKLLDEGKVPLYMSEGFECMPNRLMLPRGTEGGYP 560
           M  +  G  P  M+ G   MP+ +M PRG  G YP
Sbjct: 126 MPPMPSGPPPPSMAYGMPPMPSGMMPPRGMPGAYP 160


>Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical
           protein C14A4.4a protein.
          Length = 876

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/92 (20%), Positives = 45/92 (48%)
 Frame = +3

Query: 36  YPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNH 215
           YP+  L ++ ++  DVV++K     D+      N++    +E      +++ + + +L  
Sbjct: 388 YPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLK 447

Query: 216 KPFSVTIDVKSDIATDAVIKIFLGPKYNDXGF 311
           +      +V S+ ++D  IK++  P +N  G+
Sbjct: 448 QDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478


>AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell
           death-related nuclease 3 protein.
          Length = 876

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/92 (20%), Positives = 45/92 (48%)
 Frame = +3

Query: 36  YPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNH 215
           YP+  L ++ ++  DVV++K     D+      N++    +E      +++ + + +L  
Sbjct: 388 YPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYAREDTHYLLYSYDMLREQLLK 447

Query: 216 KPFSVTIDVKSDIATDAVIKIFLGPKYNDXGF 311
           +      +V S+ ++D  IK++  P +N  G+
Sbjct: 448 QDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478


>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 59 protein.
          Length = 1592

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 203 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 54
           W+TNL   +    NL+F  +Y + G  L ++ +    + +++  F   EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191


>AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical
           protein Y116A8C.25 protein.
          Length = 389

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 324 EENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPXTDLMKLL 467
           E +W + +E  +  H++ P  ++++   N+  LF+   +  T   KLL
Sbjct: 150 ENDWTETWEEFFIRHRLKPQIDRLIETHNDRQLFELSEILYTKTAKLL 197


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
 Frame = +3

Query: 252 IATDAVIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLF-- 425
           IA + V    LGP +   G  + L+    KF +  W+T+K+T  Q + V+ ++  ++   
Sbjct: 452 IAENPVYGSLLGPTF---GCIMALQFQKTKFGDTYWYTNKLTEDQLEEVKKTSISAMMCR 508

Query: 426 -KEDSLPXTDLMKLLDE-GKVPLYMSEGFECMPN 521
            ++ S+   D+ K  D    +P++ +      P+
Sbjct: 509 HQKTSIIQKDVFKAADNFQNIPIFCNSSVFAKPD 542


>Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical
           protein T01H10.7 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -2

Query: 582 IRKQRTGMDIHLQYLLATSIYLACIQNLQTYTTELFLRLI 463
           +RK ++ M+  L+Y+L   +   C+  L+ + T +F+ +I
Sbjct: 353 LRKNKSKMNQKLEYVLGEPLETICMVILEIFNTAIFMVMI 392


>Z48585-10|CAJ43439.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK673.11b protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 90  EKLVTFFDYSQFDATNSVFLTKKEIKTS-YPHNFKVRQPRLNHKPFSVTIDVKSDIAT 260
           E  V+ +++S+    NS   +   I  S Y +NF V     N + F  +I  +SD+A+
Sbjct: 229 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 286


>Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK673.11a protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 90  EKLVTFFDYSQFDATNSVFLTKKEIKTS-YPHNFKVRQPRLNHKPFSVTIDVKSDIAT 260
           E  V+ +++S+    NS   +   I  S Y +NF V     N + F  +I  +SD+A+
Sbjct: 238 EDQVSIYEFSRVSDPNSEHSSSNSISDSFYLNNFDVISSAANSQIFEASICGESDVAS 295


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
           protein C46A5.4 protein.
          Length = 1432

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 183 NFKVRQPRLNHKPFSVTIDVKSDIATDAVIKIFLGPKYNDXGFPITLEENWHKFYELDWF 362
           N  + +P L+  P   T   K DIA    I   +     D G P  L+  W  F +LD F
Sbjct: 452 NAPIEKPGLHSSPLLRTAFQKKDIADSVDIIAMVIQMGRDHGLPSYLQ--WRTFCKLDDF 509

Query: 363 T 365
           +
Sbjct: 510 S 510


>AC087081-18|AAK66030.1|  124|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.1 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 383 PRSYLVREPIQFVEFMPVFFQCDGESXIVV 294
           P+S L+R+PIQ V+   V   CDGE+ + +
Sbjct: 93  PQS-LLRKPIQIVDDCSVKMYCDGEAKLFI 121


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 292  LGPKKILITASVAISDLTSMVTLKGLWLSRG*RTLK 185
            +G      TAS++  D+  M+    LW+SR    LK
Sbjct: 1932 IGTSSETTTASISYQDIPEMLAASKLWISRNSEKLK 1967


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 292  LGPKKILITASVAISDLTSMVTLKGLWLSRG*RTLK 185
            +G      TAS++  D+  M+    LW+SR    LK
Sbjct: 1932 IGTSSETTTASISYQDIPEMLAASKLWISRNSEKLK 1967


>U53146-1|AAA96111.1|  348|Caenorhabditis elegans Hypothetical
           protein ZC411.1 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 529 INLFGMHSKPSDIYNGTFPSSNNFMRSVNG 440
           INL      P  ++ GT+  + NF++ V G
Sbjct: 235 INLLTGQKPPETVFQGTYVETRNFLKIVRG 264


>AC024696-1|AAK84516.1|  348|Caenorhabditis elegans Hypothetical
           protein F07B7.7 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 529 INLFGMHSKPSDIYNGTFPSSNNFMRSVNG 440
           INL      P  ++ GT+  + NF++ V G
Sbjct: 235 INLLTGQKPPETVFQGTYVETRNFLKIVRG 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,977,436
Number of Sequences: 27780
Number of extensions: 264903
Number of successful extensions: 802
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)