Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B20
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    28   0.86 
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    27   2.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   6.1  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.1  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   8.0  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   8.0  

>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 518 VWQGEMEVLWLEPHI 474
           +WQG M  LWLEP+I
Sbjct: 100 LWQGGMNHLWLEPYI 114


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +2

Query: 239 EHSHVSPPETILTTARAASEDFLFTFAEGQGKIHKKSQTGGMVCLSLPVGGTPRRIAS 412
           E ++V   +  LT+  A   D+  T A  +  +H       +  +  P GG   RIAS
Sbjct: 70  EKNNVKRTDIFLTSKLANCSDYYSTRAAIRSSLHHLGTYIDLFLIQSPAGGKKSRIAS 127


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 503 MEVLWLEPHIWLEQPTPRPALSVD 432
           + V + EPH +LE P P P  S +
Sbjct: 850 LNVDFYEPHSYLESPAPEPQPSYE 873


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 150 ALDTGLDQDTTFRPHRETVCNKCLLPSSALIV 55
           AL +G   DTTFR   ET+C    +   A IV
Sbjct: 565 ALYSGWKADTTFRRSNETMCGMVGIAIVASIV 596


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -1

Query: 189 QDTPNARATRSIPALDTGLDQDTTFRPHRETVC 91
           +D P   A RSI  L T L     F P  E  C
Sbjct: 316 EDCPARLALRSIDLLSTHLSPSQVFYPMFEAAC 348


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 178 QCPCYSFHTRPRYRL 134
           +CP +S H  PRYRL
Sbjct: 452 KCPNHSDHVTPRYRL 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,771
Number of Sequences: 5004
Number of extensions: 46787
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)