Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_B20
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0633 - 4616331-4616443,4616576-4616689,4616912-4617570,461...    29   2.7  
12_01_0620 + 5109756-5109758,5110016-5110255,5110264-5110653,511...    28   4.7  
10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521     28   4.7  
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504     28   4.7  
10_01_0139 - 1660382-1660729,1660826-1661008,1662122-1663057,166...    28   6.2  
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893...    28   6.2  

>06_01_0633 -
           4616331-4616443,4616576-4616689,4616912-4617570,
           4617593-4617672
          Length = 321

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 202 IICSHRRTTIFLR--TFARQPTGDHTHYSTSSIRGFFIHFR 318
           II   R T I  R   F +QPTG  TH+  S  + FF +F+
Sbjct: 12  IIVEKRFTDILWRFSIFIKQPTGVETHWKISIDQQFFPYFQ 52


>12_01_0620 +
           5109756-5109758,5110016-5110255,5110264-5110653,
           5110723-5110995
          Length = 301

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 391 NTSANRFCSGASVQSTESAGRGVGCSSQMWGSNQSTSISPCQTIAEPP 534
           +T+A+R  + A+  S  S    +G S +      STS S CQT    P
Sbjct: 160 STTASRHTTNAANASNNSVPSSIGQSRKRKAVELSTSTSACQTWRRSP 207


>10_08_0276 + 16431141-16431837,16432062-16432175,16432887-16433521
          Length = 481

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 244 FARQPTGDHTHYSTSSIRGFFIHFR 318
           F +QPTG  TH+  S+ + FF +F+
Sbjct: 14  FIKQPTGVETHWKISTDQQFFPYFQ 38


>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
          Length = 681

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 327 CPSAKVNKKSSDAARA--VVSMVSGGLTCECS*KY 229
           C SA VNK S          ++ SGG TCEC+ +Y
Sbjct: 258 CGSALVNKSSYACTTGSNCQNISSGGYTCECTNRY 292


>10_01_0139 -
           1660382-1660729,1660826-1661008,1662122-1663057,
           1667929-1668084,1669081-1669971
          Length = 837

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 95  TVSLCGRKVVSWSKPVSRAGMERVARALGVSCTDIALFAATDALRYFYEHSHV 253
           TV+  G +     KPV +     V+ ++ + C + + F A D   Y +  SHV
Sbjct: 598 TVTTLGLRNTIGGKPVLKDVASLVSASVVLYCVETSDFDANDLRHYLWSFSHV 650


>03_02_0502 -
           8934646-8934834,8934974-8935121,8935228-8935304,
           8935427-8935497,8935594-8935680,8935852-8936316,
           8936406-8936880
          Length = 503

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 230 YFYEHSHVSPPETILTTARAASE 298
           YF +H H +PP+T  T + A SE
Sbjct: 176 YFIQHQHPTPPQTSGTFSDAGSE 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,769
Number of Sequences: 37544
Number of extensions: 348265
Number of successful extensions: 1085
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)